Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PJ16_RS06495 Genome accession   NZ_CP010301
Coordinates   1201361..1201855 (+) Length   164 a.a.
NCBI ID   WP_002857890.1    Uniprot ID   Q9PN97
Organism   Campylobacter jejuni subsp. jejuni strain 00-0949     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1196361..1206855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJ16_RS06480 (PJ16_06480) - 1197747..1198925 (-) 1179 WP_002927156.1 metal-dependent hydrolase -
  PJ16_RS06485 (PJ16_06485) gpsA 1198935..1199831 (-) 897 WP_002859277.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  PJ16_RS06490 (PJ16_06490) gatB 1199828..1201246 (-) 1419 WP_043012901.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  PJ16_RS06495 (PJ16_06495) luxS 1201361..1201855 (+) 495 WP_002857890.1 S-ribosylhomocysteine lyase Regulator
  PJ16_RS06500 (PJ16_06500) - 1202167..1203159 (+) 993 WP_002858100.1 isopenicillin N synthase family oxygenase -
  PJ16_RS06505 (PJ16_06505) - 1203170..1203940 (+) 771 WP_002857994.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  PJ16_RS06510 (PJ16_06510) metE 1203952..1206216 (+) 2265 WP_014516816.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18209.18 Da        Isoelectric Point: 6.6314

>NTDB_id=119528 PJ16_RS06495 WP_002857890.1 1201361..1201855(+) (luxS) [Campylobacter jejuni subsp. jejuni strain 00-0949]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSIAKAWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIINNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=119528 PJ16_RS06495 WP_002857890.1 1201361..1201855(+) (luxS) [Campylobacter jejuni subsp. jejuni strain 00-0949]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTCGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTGATGAGAAAAGTATTGCAAAAGCTTGGGAAGCAGC
CATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTACCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAAGTTTTAAATCTAGGTATTAGCATAATAAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PN97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment