Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AH67_RS00765 Genome accession   NZ_CP007457
Coordinates   183530..185383 (+) Length   617 a.a.
NCBI ID   WP_101430546.1    Uniprot ID   A0A2N3QW44
Organism   Bifidobacterium pseudolongum PV8-2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 178530..190383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AH67_RS00750 (AH67_00780) - 179288..180808 (+) 1521 WP_026647935.1 amino acid permease -
  AH67_RS00755 (AH67_00785) - 180975..181577 (+) 603 WP_081277581.1 MarR family winged helix-turn-helix transcriptional regulator -
  AH67_RS00760 (AH67_00790) - 181562..183481 (+) 1920 WP_039170890.1 ABC transporter ATP-binding protein -
  AH67_RS00765 (AH67_00795) rcrQ 183530..185383 (+) 1854 WP_101430546.1 ABC transporter ATP-binding protein Regulator
  AH67_RS00770 (AH67_00800) - 185391..186821 (-) 1431 WP_039170895.1 polysaccharide deacetylase family protein -
  AH67_RS00775 (AH67_00805) - 187034..187417 (+) 384 WP_039170899.1 VOC family protein -
  AH67_RS00780 (AH67_00810) - 187602..188006 (-) 405 WP_022858152.1 hypothetical protein -
  AH67_RS00785 (AH67_00815) - 188115..188783 (+) 669 WP_039170902.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 67782.22 Da        Isoelectric Point: 5.0572

>NTDB_id=119521 AH67_RS00765 WP_101430546.1 183530..185383(+) (rcrQ) [Bifidobacterium pseudolongum PV8-2]
MPGGMGPHGPRGGAPTEKADDLGGALKDLMRFSRRYIPAIIVALVLGVVGTVCQIIGPDYLGDMTDEITKGLPAMINGKP
VLGAIDMAAVTRIGWTLVALYVAYALCSYVQSWMMATVTQRTAQRLRSAIDVKMNKLPLKYFDEHSNGDVMSRITNDVDA
VGQTLGQSLGSLITSVTLFFGALIMMFANNWLLALCAIAASLLGMVLMLVVMRFSQRYFVKQQAALGDVNGHVEEMYSGH
TVVKAFGGEADAIRRFERYNNDLYESGWKSQFLSGLMMPMMNLVGNLGYVVVCVVGAWLTMSGRIEFGVIVAFMLYIRFF
TQPLSQFAQAFQNLQRCAAGAERVFTFLNEPELADESSKQPLLGMGDNGEITPVEGRVSFEHVRFGYDADRMIIHDFSAD
VQPGQKVAIVGPTGAGKTTMVNLLMRFYEINGGKISIDGIDTKDVPRWNVHDQFSMVLQDTWVFQGTVRENIVYAKEGVS
DEQVVAACKAVGLHRYIMSLPEGYDTVLDESATLSQGQKQLLTIARAMVQDSPILILDEATSSVDTRTEELIQTAMDKLT
EGRTSFVIAHRLSTIRDADMILVMKDGDIVERGTHDELLARGGFYADIYNAQFSLAQ

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=119521 AH67_RS00765 WP_101430546.1 183530..185383(+) (rcrQ) [Bifidobacterium pseudolongum PV8-2]
ATGCCAGGAGGAATGGGGCCACACGGCCCGCGTGGTGGTGCGCCCACCGAAAAAGCGGATGATCTGGGCGGCGCGCTCAA
GGACCTGATGCGGTTCAGCCGCCGGTATATCCCGGCGATCATCGTCGCGCTCGTGCTGGGCGTGGTGGGCACGGTCTGCC
AGATCATCGGCCCGGATTATCTGGGTGACATGACCGACGAGATCACCAAGGGTTTGCCCGCGATGATCAACGGCAAGCCT
GTGCTGGGGGCTATCGACATGGCCGCCGTCACGCGCATCGGCTGGACGCTCGTGGCGCTGTATGTGGCGTATGCGCTGTG
CTCGTACGTGCAGAGCTGGATGATGGCGACCGTCACGCAGCGCACGGCGCAACGCCTGCGCTCGGCGATCGACGTGAAGA
TGAACAAACTGCCGCTCAAATACTTCGACGAGCACAGCAACGGCGACGTGATGAGCCGCATCACGAACGACGTGGACGCC
GTGGGGCAGACGCTCGGGCAGTCGCTCGGCTCACTGATCACCTCGGTCACGCTGTTCTTCGGCGCACTGATCATGATGTT
CGCGAACAACTGGCTGCTCGCGTTGTGCGCGATCGCGGCGAGCCTGCTGGGCATGGTGCTCATGCTCGTCGTCATGCGGT
TCTCGCAGCGGTACTTCGTCAAGCAGCAGGCGGCGCTCGGCGACGTCAACGGCCACGTCGAGGAGATGTACAGCGGGCAC
ACGGTCGTCAAGGCGTTCGGCGGCGAGGCGGACGCGATCCGCCGGTTCGAGCGCTACAACAACGACCTGTACGAGTCGGG
GTGGAAGAGCCAGTTTCTTTCCGGCCTGATGATGCCGATGATGAACCTCGTCGGTAATCTCGGGTATGTCGTCGTGTGTG
TCGTCGGCGCGTGGCTCACGATGAGCGGGCGCATCGAATTCGGCGTCATCGTGGCGTTCATGTTGTACATCCGCTTCTTC
ACGCAGCCGCTTTCGCAGTTCGCGCAGGCGTTCCAGAACCTGCAGCGCTGCGCGGCCGGCGCCGAGCGCGTGTTCACGTT
CCTCAACGAACCGGAGCTCGCCGACGAATCGTCTAAGCAGCCACTGCTCGGCATGGGCGACAACGGCGAGATCACGCCGG
TCGAGGGGCGCGTGAGTTTCGAGCACGTCAGGTTCGGGTACGACGCCGACCGCATGATCATCCATGATTTCTCCGCGGAC
GTGCAGCCGGGGCAGAAGGTCGCGATCGTCGGGCCGACGGGCGCGGGCAAGACGACAATGGTCAACCTACTGATGCGGTT
CTACGAGATCAACGGCGGCAAGATCTCGATTGACGGCATCGACACGAAGGACGTGCCGCGCTGGAACGTGCATGACCAGT
TCTCGATGGTGCTGCAGGACACCTGGGTGTTCCAAGGCACCGTGCGCGAGAACATCGTGTATGCGAAGGAAGGCGTGAGC
GACGAGCAGGTCGTCGCGGCGTGCAAGGCCGTGGGATTGCACCGCTACATCATGTCGCTGCCCGAGGGCTACGACACCGT
GCTCGACGAGTCGGCCACGCTGTCGCAAGGCCAGAAGCAGCTGCTGACGATCGCGCGTGCGATGGTGCAGGATTCGCCGA
TCCTGATCCTCGACGAGGCGACGAGTTCGGTCGACACGCGCACCGAGGAACTGATCCAGACGGCGATGGACAAGCTCACC
GAAGGGCGCACGAGTTTCGTCATCGCGCACCGCCTCTCCACGATCCGCGACGCCGACATGATCCTCGTCATGAAGGACGG
CGACATCGTGGAACGCGGCACGCACGACGAGCTGCTCGCGCGCGGCGGTTTCTATGCCGACATCTACAACGCGCAGTTCT
CCTTGGCGCAGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(40-324)

ABC transporter (ABC_tran)

(395-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N3QW44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.672

92.869

0.517

Multiple sequence alignment