Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   Q433_RS05495 Genome accession   NZ_CP007409
Coordinates   1059595..1060173 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1054595..1065173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q433_RS05475 (Q433_05875) hemAT 1055106..1056404 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  Q433_RS05480 (Q433_05885) comW 1056543..1058072 (-) 1530 WP_038427579.1 FAD-dependent oxidoreductase -
  Q433_RS05485 (Q433_05890) yhxC 1058184..1059041 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  Q433_RS05490 (Q433_05895) yhzC 1059069..1059302 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  Q433_RS05495 (Q433_05900) comK 1059595..1060173 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  Q433_RS05500 (Q433_05905) yhxD 1060220..1061119 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  Q433_RS05505 (Q433_05915) yhjA 1061336..1061605 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  Q433_RS05510 (Q433_05920) yhjB 1061649..1063118 (-) 1470 WP_029726292.1 sodium:solute symporter -
  Q433_RS05515 (Q433_05925) yhjC 1063115..1063315 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  Q433_RS05520 (Q433_05930) - 1063523..1063885 (-) 363 WP_003233132.1 hypothetical protein -
  Q433_RS05525 (Q433_05935) yhjE 1064037..1064660 (+) 624 WP_010886465.1 VTT domain-containing protein -
  Q433_RS05530 (Q433_05940) lepB 1064662..1065168 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=119195 Q433_RS05495 WP_029317573.1 1059595..1060173(+) (comK) [Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=119195 Q433_RS05495 WP_029317573.1 1059595..1060173(+) (comK) [Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment