Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CF57_RS14170 Genome accession   NZ_CP007390
Coordinates   2828889..2829518 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ST540     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2823889..2834518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF57_RS14155 (CF57_18110) helD 2824131..2826185 (-) 2055 WP_001515148.1 DNA helicase IV -
  CF57_RS14160 (CF57_18115) yccF 2826308..2826754 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CF57_RS14165 (CF57_18120) yccS 2826764..2828926 (+) 2163 WP_072291935.1 YccS family putative transporter -
  CF57_RS14170 (CF57_18125) sxy/tfoX 2828889..2829518 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CF57_RS14175 (CF57_18130) sulA 2829737..2830246 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CF57_RS14185 (CF57_18145) ompA 2830603..2831643 (+) 1041 WP_000750416.1 porin OmpA -
  CF57_RS14190 (CF57_18150) matP 2831719..2832171 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CF57_RS14195 (CF57_18155) ycbZ 2832357..2834117 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=119062 CF57_RS14170 WP_000839153.1 2828889..2829518(-) (sxy/tfoX) [Escherichia coli strain ST540]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=119062 CF57_RS14170 WP_000839153.1 2828889..2829518(-) (sxy/tfoX) [Escherichia coli strain ST540]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment