Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   RG73_RS07585 Genome accession   NZ_CP010242
Coordinates   1430199..1431224 (-) Length   341 a.a.
NCBI ID   WP_000644904.1    Uniprot ID   P0ACN8
Organism   Escherichia coli strain S56     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1425199..1436224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG73_RS07555 (RG73_07115) zapB 1425283..1425528 (+) 246 WP_001296623.1 septal ring assembly protein ZapB -
  RG73_RS07560 (RG73_07120) rraA 1425613..1426098 (-) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  RG73_RS07565 (RG73_07125) menA 1426191..1427117 (-) 927 WP_001307494.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  RG73_RS07570 (RG73_07130) hslU 1427184..1428515 (-) 1332 WP_001293343.1 HslU--HslV peptidase ATPase subunit -
  RG73_RS07575 (RG73_07135) hslV 1428525..1429055 (-) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  RG73_RS07580 (RG73_07140) ftsN 1429148..1430107 (-) 960 WP_000068834.1 cell division protein FtsN -
  RG73_RS07585 (RG73_07145) cytR 1430199..1431224 (-) 1026 WP_000644904.1 DNA-binding transcriptional regulator CytR Regulator
  RG73_RS07590 (RG73_07150) priA 1431380..1433578 (-) 2199 WP_053289018.1 primosomal protein N' Machinery gene
  RG73_RS07595 (RG73_07155) rpmE 1433781..1433993 (+) 213 WP_000710769.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37819.78 Da        Isoelectric Point: 6.3842

>NTDB_id=118932 RG73_RS07585 WP_000644904.1 1430199..1431224(-) (cytR) [Escherichia coli strain S56]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=118932 RG73_RS07585 WP_000644904.1 1430199..1431224(-) (cytR) [Escherichia coli strain S56]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTATCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.179

98.24

0.63
  cytR Vibrio cholerae C6706

65.443

95.894

0.628