Detailed information NTG0118901

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: RG73_RS00625
• Genome accession: NZ_CP010242
• Coordinates: 113735..114727 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain S56
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 108735..119727

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RG73_RS00600 (RG73_00585)	ygbN	109390..110754 (+)	1365	WP_000104439.1	GntP family transporter	-
RG73_RS00605 (RG73_00590)	-	110793..111029 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
RG73_RS00610 (RG73_00595)	-	111040..112467 (-)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
RG73_RS00615 (RG73_00600)	-	112467..113060 (-)	594	WP_074014535.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
RG73_RS00620 (RG73_00605)	-	113207..113614 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
RG73_RS00625 (RG73_00610)	rpoS	113735..114727 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
RG73_RS00630 (RG73_00615)	nlpD	114790..115884 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
RG73_RS00635 (RG73_00620)	pcm	116069..116695 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
RG73_RS00640 (RG73_00625)	surE	116689..117450 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
RG73_RS00645 (RG73_00630)	truD	117431..118480 (-)	1050	WP_001583842.1	tRNA pseudouridine(13) synthase TruD	-
RG73_RS00650 (RG73_00635)	ispF	118477..118956 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
RG73_RS00655 (RG73_00640)	ispD	118956..119666 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=118901 RG73_RS00625 WP_000081550.1 113735..114727(-) (rpoS) [Escherichia coli strain S56]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=118901 RG73_RS00625 WP_000081550.1 113735..114727(-) (rpoS) [Escherichia coli strain S56]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715