Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RG71_RS12095 Genome accession   NZ_CP010237
Coordinates   2318707..2319384 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain S43     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2313707..2324384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG71_RS12080 (RG71_11185) chiA 2315074..2317767 (+) 2694 WP_000773156.1 bifunctional chitinase/lysozyme -
  RG71_RS12085 (RG71_11190) bfd 2317936..2318130 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  RG71_RS12090 (RG71_11195) bfr 2318202..2318678 (+) 477 WP_000675504.1 bacterioferritin -
  RG71_RS12095 (RG71_11200) pilD 2318707..2319384 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  RG71_RS12100 (RG71_11205) gspM 2319384..2319845 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  RG71_RS27290 - 2319842..2319976 (-) 135 Protein_2168 GspL/Epsl periplasmic domain-containing protein -
  RG71_RS12110 (RG71_11210) - 2319996..2320472 (-) 477 Protein_2169 IS3 family transposase -
  RG71_RS12115 (RG71_11215) ltrA 2320553..2322061 (-) 1509 WP_001189123.1 group II intron reverse transcriptase/maturase -
  RG71_RS12130 - 2322734..2323162 (-) 429 Protein_2171 IS3 family transposase -
  RG71_RS12140 (RG71_11220) - 2323172..2324323 (-) 1152 WP_001254932.1 IS30-like element IS30 family transposase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=118775 RG71_RS12095 WP_000178161.1 2318707..2319384(-) (pilD) [Escherichia coli strain S43]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=118775 RG71_RS12095 WP_000178161.1 2318707..2319384(-) (pilD) [Escherichia coli strain S43]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378