Detailed information NTG0118740

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RG71_RS04175
• Genome accession: NZ_CP010237
• Coordinates: 761801..764683 (+)
• Length: 960 a.a.
• NCBI ID: WP_000101612.1
• Uniprot ID: -
• Organism: Escherichia coli strain S43
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 756801..769683

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RG71_RS04130 (RG71_03755)	-	757116..758192 (+)	1077	WP_073528146.1	IS110 family transposase	-
RG71_RS27155 (RG71_03760)	-	758209..758517 (+)	309	Protein_746	integrase core domain-containing protein	-
RG71_RS04140 (RG71_03765)	-	758526..759713 (-)	1188	Protein_747	IS256 family transposase	-
RG71_RS27160	-	759931..760095 (-)	165	Protein_748	transposase domain-containing protein	-
RG71_RS27165 (RG71_03770)	-	760040..760303 (-)	264	WP_001247776.1	transposase	-
RG71_RS27170 (RG71_03775)	-	760318..760581 (+)	264	WP_001295708.1	hypothetical protein	-
RG71_RS04165 (RG71_03780)	-	760810..761091 (+)	282	WP_000643628.1	helix-turn-helix domain-containing protein	-
RG71_RS04170 (RG71_03785)	hsp20	761126..761695 (+)	570	WP_000350435.1	small heat shock protein sHSP20	-
RG71_RS04175 (RG71_03790)	clpC	761801..764683 (+)	2883	WP_000101612.1	heat shock survival AAA family ATPase ClpK	Regulator
RG71_RS04180 (RG71_03795)	-	764683..764874 (+)	192	WP_073528147.1	hypothetical protein	-
RG71_RS04185 (RG71_03800)	-	764935..766662 (+)	1728	WP_000412528.1	FtsH/Yme1/Tma family ATP-dependent metallopeptidase	-
RG71_RS04190 (RG71_03805)	hsp20-GI	766750..767208 (+)	459	WP_001275372.1	small heat shock protein sHSP20-GI	-
RG71_RS04195 (RG71_03810)	yfdX1	767231..768145 (+)	915	WP_001022485.1	heat resistance protein YfdX1	-
RG71_RS04200 (RG71_03815)	yfdX2	768248..769135 (+)	888	WP_001005473.1	heat resistance protein YfdX2	-

Sequence

Protein

• Length: 960 a.a.
• Molecular weight: 105563.39 Da
• Isoelectric Point: 5.7134

>NTDB_id=118740 RG71_RS04175 WP_000101612.1 761801..764683(+) (clpC) [Escherichia coli strain S43]
MARKQCQVCGQPATVRVEANLNGRHSTMLLCDDHYRQLVRQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDATPVAA
DTDDVVDASFGEPAAAGSGAPRRRGSGLASRISEQSEALLQEAAKHAAEFGRSEVDTEHLLLALADSDVVKTILGQFKIK
VDDLKRQIESEAKRGDKPFEGEIGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMARDGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGELILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVTVPEPTVAQTIMILRGLRDTFEAHHKVSISEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYVAARKQYDQAAELGKRIEAKEAELKK
LVENWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGS
KPVATFLFLGPTGVGKTELAKALAESIYGDEHALLRIDMSEYGERHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKARGAADEEYEKTKAEVMDVLRGHFR
PEFLNRIDEIIVFHALGKEEIRHIVGLQLDRVARSAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKGDHASARWDDKAERVVFERKEPLQTPAEPEQPDAAKATEPEQPDAAKATETPHGDAGKGSRKKKSASDAS

Nucleotide

• Length: 2883 bp

>NTDB_id=118740 RG71_RS04175 WP_000101612.1 761801..764683(+) (clpC) [Escherichia coli strain S43]
ATGGCCAGAAAACAATGCCAGGTCTGCGGCCAACCCGCTACCGTGCGGGTGGAAGCCAATCTCAACGGTCGTCACAGCAC
CATGCTGTTGTGCGACGACCATTACCGGCAATTAGTGCGCCAGCAAAAGCGCACCGTTTCGCCGCTGGAAGCCTTGTTCG
GTTCGCGCAGCGGCCTGTTCGAGGACTTCCTCGGCAGTGACTTCTTCCGCATCGGCGACGACGCGACGCCAGTTGCCGCC
GATACCGATGACGTGGTCGATGCCTCGTTTGGCGAGCCCGCCGCCGCAGGTTCGGGTGCGCCGCGCCGTCGCGGCAGTGG
GCTGGCCAGCCGCATCAGCGAACAGTCGGAAGCCTTGTTGCAGGAGGCCGCCAAACACGCTGCCGAATTTGGCCGCTCCG
AGGTGGATACCGAACATCTGCTGCTGGCGCTGGCCGACAGCGACGTGGTCAAGACCATCCTGGGTCAGTTCAAGATCAAG
GTCGATGACCTCAAGCGGCAGATCGAGTCTGAGGCCAAGCGCGGGGACAAGCCCTTCGAGGGCGAGATCGGCGTGTCGCC
GCGCGTGAAGGATGCGCTCAGCCGCGCCTTCGTGGCCTCCAATGAACTCGGCCATTCTTATGTCGGTCCAGAGCATTTCC
TGATTGGTCTGGCCGAGGAAGGCGAAGGGCTGGCCGCCAACCTGCTGCGCCGCTACGGCCTGACGCCGCAGGCGCTGCGC
CAACAGGTCAGCAAGGTGGTCGGCAAGGGCGCCGAGGATGGACGCGCTGAGACGCCGACCAACACGCCAGAACTCGACAA
GTACTCGCGCGACCTGACCAAGATGGCGCGCGACGGCAAGCTCGACCCGGTGATCGGCCGCGCGCAGGAGATCGAAACCA
CCATCGAGGTGCTGGCCCGGCGCAAGAAGAACAACCCGGTGCTGATCGGCGAGCCGGGTGTGGGCAAGACCGCCATCGTC
GAAGGGCTGGCGCAGCGCATGGTGGCGGGTGAAGTGCCCGAGACCTTGCGCGACAAGCGCCTGGTGGAACTCAACATCAA
CGCCATGGTGGCCGGCGCCAAATATCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTGAAGGAGGTGACCGAGCACC
AGGGCGAGCTGATTTTGTTCATCGACGAGGTGCACACCATCGTCGGTGCCGGCCAGGGCGGTGGCGAAGGCGGGCTGGAC
GTGGCCAACGTATTCAAACCGATGATGGCGCGCGGTGAACTCAACCTGATCGGCGCCACGACGCTGAACGAGTACCAGAA
ATACATCGAGAAGGATGCCGCACTGGAGCGGCGCTTCCAGCCGGTGACGGTGCCCGAGCCGACGGTGGCCCAGACCATCA
TGATTCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCTCCGAGGACGCGATCATCGCGGCGGCC
GAGTTGTCCGACCGCTACATCACGGCGCGCTTCCTGCCGGACAAGGCGATCGACCTGCTCGACCAGGCGGCCGCGCGCGT
GAAGCTGTCGGCCACGGCCCGGCCGGTGGCCGTGCAGGAGCTGGAGTCCGAACTGCACCAGCTGCGGCGTGAACAGGATT
ACGTGGCCGCGCGCAAGCAGTACGACCAGGCCGCCGAGCTCGGCAAGCGCATCGAAGCCAAGGAGGCCGAGCTCAAGAAG
CTCGTCGAGAACTGGGAGCGGGAGCGGGCCTCCGGCAGTGCAGAGGTCAAGGCGGAACACGTGGCGCAGATCGTCTCGCG
CCTGACCGGCATCCCGGTCAACGAGTTGACGGTGGAAGAGCGCGAAAAGCTGCTGCACTTGGAACAACGGCTGCACGAGC
GCCTGGTGGGACAAGACGAGGCGGTCCGTGCCGTGGCCGATGCCGTGCGGCTGTCCCGCGCCGGCCTGCGCGAAGGCAGC
AAACCGGTGGCTACCTTCCTGTTTCTGGGCCCGACCGGGGTGGGCAAGACCGAGCTCGCCAAGGCATTGGCCGAATCGAT
CTACGGCGATGAGCACGCCCTGTTGCGCATCGACATGTCGGAATATGGCGAACGCCATACCGTGGCGCGGCTGGTGGGCG
CGCCTCCGGGCTATGTCGGTTACGACGAAGGCGGTCAGCTCACCGAGAAGGTGCGGCGCAAGCCCTACAGCGTGCTGCTG
CTCGACGAGATCGAGAAGGCACACCCTGACGTCTACAACATCCTGCTGCAAGTGTTCGACGACGGTCGCCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAACACCATCATCATCGCCACGTCCAACCTGGGTTCGGACATCATCCAGCGACGGC
TGAAGGCGCGTGGGGCGGCCGACGAGGAGTACGAAAAGACCAAGGCCGAGGTCATGGACGTGCTGCGCGGCCACTTCCGG
CCCGAGTTCCTCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGTAAGGAGGAGATCCGCCACATCGTCGGCCT
GCAGCTCGATCGCGTGGCGCGCAGCGCCGCCAGCCAGGGCGTGACGCTCACTTTCGATCAGACGCTGATCGACCATTTCG
CGGAAGAAGGCTACAAACCCGAGTTCGGTGCGCGTGAACTCAAGCGCCTGATCCGCAGCGAGCTGGAAACTGCGCTGGCG
CGCGAGATGCTCGGTGGCGGCATCGGCAAGGGCGATCACGCCAGCGCACGCTGGGACGACAAGGCCGAACGCGTGGTGTT
CGAACGCAAAGAGCCACTGCAGACCCCGGCCGAGCCGGAGCAGCCGGATGCCGCGAAGGCGACCGAGCCGGAGCAGCCGG
ATGCCGCGAAGGCGACCGAGACGCCGCACGGCGACGCTGGCAAAGGCTCGCGCAAGAAGAAGTCGGCGAGCGACGCATCT
TGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (307-428)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (123-171)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (199-248)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (816-894)

• AAA lid domain (AAA_lid_9) (449-547)

• AAA domain (Cdc48 subfamily) (AAA_2) (641-810)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	50.569	82.396	0.417
clpC	Streptococcus thermophilus LMD-9	42.581	86.354	0.368
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.28	84.479	0.366
clpC	Streptococcus thermophilus LMG 18311	42.494	86.042	0.366