Detailed information NTG0118732

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RG71_RS00765
• Genome accession: NZ_CP010237
• Coordinates: 142393..145242 (-)
• Length: 949 a.a.
• NCBI ID: WP_000101609.1
• Uniprot ID: -
• Organism: Escherichia coli strain S43
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 137393..150242

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RG71_RS00745 (RG71_00650)	yfdX1	137622..138530 (-)	909	WP_021567662.1	heat resistance protein YfdX1	-
RG71_RS00750 (RG71_00655)	hsp20-GI	138552..139010 (-)	459	WP_023205562.1	small heat shock protein sHSP20-GI	-
RG71_RS00755 (RG71_00660)	ftsH	139089..140918 (-)	1830	WP_021567664.1	ATP-dependent zinc metalloprotease FtsH	-
RG71_RS00760 (RG71_00665)	cls	140946..142376 (-)	1431	WP_023205563.1	cardiolipin synthase	-
RG71_RS00765 (RG71_00670)	clpC	142393..145242 (-)	2850	WP_000101609.1	heat shock survival AAA family ATPase ClpK	Regulator
RG71_RS00770 (RG71_00675)	-	145340..145909 (-)	570	WP_000350432.1	Hsp20/alpha crystallin family protein	-
RG71_RS00775 (RG71_00680)	-	145945..146226 (-)	282	WP_000127020.1	helix-turn-helix domain-containing protein	-
RG71_RS27035 (RG71_00685)	-	146454..146717 (-)	264	WP_001446200.1	hypothetical protein	-
RG71_RS27040	-	146732..146995 (+)	264	WP_001446199.1	transposase	-
RG71_RS27045	-	146952..147104 (+)	153	Protein_147	transposase domain-containing protein	-
RG71_RS00795	-	147398..147496 (-)	99	Protein_148	ATP-binding protein	-
RG71_RS00800 (RG71_00695)	-	147588..149168 (-)	1581	WP_000881617.1	Tn7-like element transposition protein TnsE	-

Sequence

Protein

• Length: 949 a.a.
• Molecular weight: 104476.27 Da
• Isoelectric Point: 5.4607

>NTDB_id=118732 RG71_RS00765 WP_000101609.1 142393..145242(-) (clpC) [Escherichia coli strain S43]
MARKQCQVCGQPATVRVEANLNGRHSTMLLCDDHYRQLARQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDSPSMAA
DTDEVVDASFGEPAPAGTGTARRRGSGLASRISEQSEALLQEAARHAAEFGRAEVDTEHLLLALSDSDVVKTILGQFKIK
VDDLKRQIESEAKRGEKPFEGEVGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMAREGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGEMILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVMVPEPTVAQTMMILRGLRDTFEAHHKVSITEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYMASRKQYDKAAELGKRIEAKETELKQ
LVEEWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGD
KPVATFLFLGPTGVGKTELAKALAESIYGDEGALLRIDMSEYGERHAVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKAGGAAGEEYEKTKSEVMDVLRGHFR
PEFINRIDEIIVFHALGKEEIRHIVGLQLDRVARNAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKGDHANARWDDKAERVVFERQEPPAKSAEPEKPDAADVAEAPPGDASKPARKKKSADGES

Nucleotide

• Length: 2850 bp

>NTDB_id=118732 RG71_RS00765 WP_000101609.1 142393..145242(-) (clpC) [Escherichia coli strain S43]
ATGGCCAGAAAACAATGCCAGGTCTGCGGCCAGCCCGCCACGGTGCGGGTGGAAGCCAATCTCAATGGTCGCCACAGCAC
CATGCTGTTGTGTGACGATCACTATCGCCAACTGGCGCGCCAGCAAAAGCGCACCGTCTCGCCGCTGGAAGCCTTGTTTG
GCTCGCGCAGCGGCTTGTTCGAAGACTTCCTCGGCAGCGACTTCTTCCGCATCGGTGACGATTCGCCGTCCATGGCGGCC
GATACCGACGAGGTGGTCGATGCCTCGTTCGGCGAACCCGCCCCGGCCGGTACGGGCACTGCGCGCCGTCGCGGCAGTGG
GCTCGCCAGCCGTATCAGCGAACAGTCCGAGGCCCTATTGCAGGAGGCCGCCCGACACGCTGCAGAGTTCGGGCGCGCCG
AAGTCGATACCGAACACCTGCTGCTGGCGCTATCCGACAGCGACGTGGTGAAGACCATCCTGGGACAGTTCAAGATCAAG
GTCGATGACCTCAAGCGACAGATCGAATCCGAAGCCAAGCGCGGCGAGAAGCCGTTCGAGGGCGAAGTCGGCGTGTCGCC
CCGGGTCAAGGACGCGCTCAGCCGCGCTTTCGTGGCCTCCAACGAACTCGGCCACTCTTATGTCGGGCCGGAGCATTTCC
TGATCGGGCTCGCTGAGGAAGGCGAAGGTTTGGCGGCCAACCTGCTGCGCCGTTACGGCCTCACGCCGCAAGCGCTGCGC
CAGCAGGTAAGCAAGGTGGTCGGCAAAGGGGCCGAGGATGGCCGCGCCGAGACGCCGACCAACACGCCCGAGCTGGATAA
ATACTCGCGCGACCTCACCAAGATGGCGCGCGAGGGCAAACTCGATCCAGTCATCGGCCGTGCGCAGGAGATCGAGACCA
CCATCGAGGTGCTGGCCCGGCGCAAGAAAAACAACCCGGTGTTGATCGGTGAGCCCGGCGTCGGCAAGACCGCCATTGTC
GAAGGGCTGGCGCAGCGCATGGTCGCCGGTGAAGTGCCCGAGACGCTGCGCGACAAGCGTCTGGTCGAGCTCAACATCAA
CGCCATGGTGGCAGGCGCCAAGTATCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTCAAGGAAGTGACCGAGCACC
AGGGCGAGATGATTCTCTTCATCGATGAAGTGCACACCATCGTCGGTGCAGGCCAGGGTGGCGGCGAAGGCGGGCTGGAC
GTGGCCAACGTGTTCAAGCCGATGATGGCGCGCGGCGAACTGAACCTGATCGGCGCCACCACGCTCAACGAGTATCAGAA
GTACATCGAGAAGGACGCCGCGCTGGAGCGTCGTTTCCAGCCGGTGATGGTGCCCGAGCCGACGGTAGCGCAGACCATGA
TGATCCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCACCGAGGATGCGATCATCGCCGCCGCC
GAGTTGTCGGACCGCTACATCACCGCGCGCTTTTTGCCTGACAAGGCCATCGACCTGCTTGACCAGGCGGCCGCACGCGT
GAAGCTGTCGGCCACGGCTCGCCCGGTGGCGGTGCAGGAGCTGGAGTCCGAACTGCACCAGTTGCGGCGTGAGCAGGACT
ACATGGCCTCGCGCAAGCAGTACGACAAGGCCGCCGAGCTGGGCAAGCGCATCGAGGCCAAGGAGACTGAACTCAAGCAG
CTCGTCGAGGAATGGGAACGCGAGCGCGCCTCGGGCAGCGCCGAAGTCAAGGCCGAGCATGTCGCGCAGATCGTCTCGCG
CCTGACCGGCATTCCGGTCAACGAGCTGACGGTGGAAGAACGCGAGAAGCTGCTGCATCTGGAGCAGCGGCTGCATGAGC
GCCTGGTGGGCCAGGACGAAGCGGTGCGCGCGGTGGCCGATGCCGTGCGGTTGTCGCGCGCGGGCCTGCGCGAAGGCGAC
AAGCCGGTGGCGACTTTCCTGTTCCTTGGGCCGACCGGCGTGGGCAAGACCGAGCTCGCCAAGGCGCTGGCCGAGTCCAT
CTATGGCGATGAAGGTGCGCTGCTGCGCATCGACATGTCCGAGTACGGGGAACGCCATGCCGTGGCACGCCTGGTGGGCG
CGCCTCCGGGTTATGTGGGCTATGACGAGGGCGGCCAGCTCACCGAGAAGGTGCGTCGCAAGCCCTACAGCGTGTTGCTG
CTCGATGAGATCGAAAAAGCGCACCCCGACGTCTACAACATCCTGCTGCAGGTGTTCGACGACGGGCGGCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAATACCATCATCATCGCCACCTCGAACCTGGGCTCGGACATCATCCAGCGTCGGC
TGAAGGCCGGTGGCGCCGCCGGCGAGGAATACGAGAAGACCAAGTCCGAGGTGATGGACGTGCTGCGCGGACACTTCCGC
CCCGAGTTCATCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGCAAGGAGGAGATCCGCCATATCGTCGGCCT
GCAGCTTGATCGTGTGGCCCGCAACGCCGCCAGCCAGGGCGTGACGCTGACCTTCGATCAGACCTTGATCGACCACTTCG
CGGAGGAAGGCTACAAGCCCGAGTTCGGCGCGCGTGAGCTCAAGCGGCTGATCCGCAGCGAGCTGGAAACCGCGCTGGCG
CGCGAGATGCTGGGTGGCGGTATCGGCAAGGGTGATCACGCCAACGCCCGCTGGGACGACAAGGCCGAACGGGTGGTCTT
CGAGCGCCAGGAGCCACCCGCGAAGTCGGCTGAGCCTGAAAAGCCCGATGCCGCGGACGTGGCCGAGGCACCGCCTGGCG
ACGCGAGCAAGCCTGCGCGCAAGAAGAAGTCAGCGGATGGCGAATCTTGA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (123-171)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (199-248)

• AAA domain (Cdc48 subfamily) (AAA_2) (641-810)

• AAA lid domain (AAA_lid_9) (449-547)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (816-894)

• ATPase family associated with various cellular activities (AAA) (AAA) (307-440)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	51.069	83.772	0.428
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.399	86.196	0.374
clpC	Streptococcus thermophilus LMD-9	42.01	87.039	0.366
clpC	Streptococcus thermophilus LMG 18311	41.92	86.723	0.364
clpC	Streptococcus mutans UA159	42.279	85.985	0.364
clpC	Streptococcus pneumoniae Rx1	42.066	85.669	0.36
clpC	Streptococcus pneumoniae D39	42.066	85.669	0.36