Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RG70_RS13835 Genome accession   NZ_CP010236
Coordinates   2647298..2647813 (-) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain S42     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2642298..2652813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG70_RS13810 (RG70_13095) ygaZ 2642697..2643434 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  RG70_RS13815 (RG70_13100) ygaH 2643424..2643759 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  RG70_RS13820 (RG70_13105) emrR 2643850..2644380 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  RG70_RS13825 (RG70_13110) emrA 2644507..2645679 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  RG70_RS13830 (RG70_13115) emrB 2645696..2647234 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  RG70_RS13835 (RG70_13120) luxS 2647298..2647813 (-) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  RG70_RS13840 (RG70_13125) gshA 2647963..2649519 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  RG70_RS13845 (RG70_13130) yqaA 2649592..2650020 (-) 429 WP_001287454.1 YqaA family protein -
  RG70_RS13850 (RG70_13135) yqaB 2650017..2650583 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  RG70_RS13875 (RG70_13160) csrA 2651766..2651951 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=118685 RG70_RS13835 WP_001130210.1 2647298..2647813(-) (luxS) [Escherichia coli strain S42]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=118685 RG70_RS13835 WP_001130210.1 2647298..2647813(-) (luxS) [Escherichia coli strain S42]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737