Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BU34_RS01355 Genome accession   NZ_CP007265
Coordinates   256632..257261 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ST540     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 251632..262261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BU34_RS01340 (BU34_01705) helD 251874..253928 (-) 2055 WP_001515148.1 DNA helicase IV -
  BU34_RS01345 (BU34_01710) yccF 254051..254497 (+) 447 WP_001261235.1 YccF domain-containing protein -
  BU34_RS01350 (BU34_01715) yccS 254507..256669 (+) 2163 WP_072291935.1 YccS family putative transporter -
  BU34_RS01355 (BU34_01720) sxy/tfoX 256632..257261 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BU34_RS01360 (BU34_01725) sulA 257480..257989 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  BU34_RS01370 (BU34_01740) ompA 258346..259386 (+) 1041 WP_000750416.1 porin OmpA -
  BU34_RS01375 (BU34_01745) matP 259462..259914 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  BU34_RS01380 (BU34_01750) ycbZ 260100..261860 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=118608 BU34_RS01355 WP_000839153.1 256632..257261(-) (sxy/tfoX) [Escherichia coli strain ST540]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=118608 BU34_RS01355 WP_000839153.1 256632..257261(-) (sxy/tfoX) [Escherichia coli strain ST540]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment