Detailed information NTG0118546

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: RG68_RS17860
• Genome accession: NZ_CP010231
• Coordinates: 3412830..3413855 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain S30
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3407830..3418855

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RG68_RS17830 (RG68_16810)	zapB	3407914..3408159 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
RG68_RS17835 (RG68_16815)	rraA	3408244..3408729 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
RG68_RS17840 (RG68_16820)	menA	3408822..3409748 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
RG68_RS17845 (RG68_16825)	hslU	3409815..3411146 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
RG68_RS17850 (RG68_16830)	hslV	3411156..3411686 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
RG68_RS17855 (RG68_16835)	ftsN	3411779..3412738 (-)	960	WP_000068828.1	cell division protein FtsN	-
RG68_RS17860 (RG68_16840)	cytR	3412830..3413855 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
RG68_RS17865 (RG68_16845)	priA	3414011..3416209 (-)	2199	WP_001300388.1	primosomal protein N'	Machinery gene
RG68_RS17870 (RG68_16850)	rpmE	3416412..3416624 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
RG68_RS17875 (RG68_16855)	yiiX	3416685..3417293 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
RG68_RS17880 (RG68_16860)	metJ	3417477..3417794 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=118546 RG68_RS17860 WP_000644904.1 3412830..3413855(-) (cytR) [Escherichia coli strain S30]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=118546 RG68_RS17860 WP_000644904.1 3412830..3413855(-) (cytR) [Escherichia coli strain S30]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628