Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RG67_RS15370 Genome accession   NZ_CP010230
Coordinates   2946896..2947363 (+) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain S21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2941896..2952363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG67_RS15320 (RG67_14560) rplP 2942006..2942416 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  RG67_RS15325 (RG67_14565) rpsC 2942429..2943130 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  RG67_RS15330 (RG67_14570) rplV 2943148..2943480 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  RG67_RS15335 (RG67_14575) rpsS 2943495..2943773 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  RG67_RS15340 (RG67_14580) rplB 2943790..2944611 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  RG67_RS15345 (RG67_14585) rplW 2944629..2944931 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  RG67_RS15350 (RG67_14590) rplD 2944928..2945533 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  RG67_RS15355 (RG67_14595) rplC 2945544..2946173 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  RG67_RS15360 (RG67_14600) rpsJ 2946206..2946517 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  RG67_RS15370 (RG67_14610) pilD 2946896..2947363 (+) 468 WP_000340171.1 A24 family peptidase Machinery gene
  RG67_RS15375 (RG67_14615) bfr 2947360..2947836 (-) 477 WP_000675515.1 bacterioferritin -
  RG67_RS15380 (RG67_14620) bfd 2947909..2948103 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  RG67_RS15390 (RG67_14625) tuf 2948286..2949470 (-) 1185 WP_000031783.1 elongation factor Tu -
  RG67_RS15395 (RG67_14630) fusA 2949541..2951655 (-) 2115 WP_000124700.1 elongation factor G -
  RG67_RS15400 (RG67_14635) rpsG 2951752..2952222 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=118450 RG67_RS15370 WP_000340171.1 2946896..2947363(+) (pilD) [Escherichia coli strain S21]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=118450 RG67_RS15370 WP_000340171.1 2946896..2947363(+) (pilD) [Escherichia coli strain S21]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361