Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AJ82_RS14485 Genome accession   NZ_CP007244
Coordinates   3026886..3027530 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis TrigoCor1448     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3021886..3032530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJ82_RS14450 (AJ82_16240) - 3023071..3023502 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  AJ82_RS14455 (AJ82_16245) - 3023502..3023843 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  AJ82_RS14460 (AJ82_16250) - 3023836..3025317 (+) 1482 WP_025285189.1 Na+/H+ antiporter subunit D -
  AJ82_RS14465 (AJ82_16255) - 3025323..3025799 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  AJ82_RS14470 (AJ82_16260) - 3025799..3026083 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  AJ82_RS14475 (AJ82_16265) mnhG 3026067..3026441 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  AJ82_RS14480 (AJ82_16270) - 3026481..3026864 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  AJ82_RS14485 (AJ82_16275) comA 3026886..3027530 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  AJ82_RS14490 (AJ82_16280) comP 3027611..3029917 (-) 2307 WP_025285190.1 sensor histidine kinase Regulator
  AJ82_RS14495 (AJ82_16285) comX 3029936..3030112 (-) 177 WP_015240484.1 competence pheromone ComX -
  AJ82_RS14500 (AJ82_16290) - 3030127..3031002 (-) 876 WP_025285191.1 polyprenyl synthetase family protein -
  AJ82_RS14505 (AJ82_16295) degQ 3031154..3031294 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  AJ82_RS14515 (AJ82_16305) - 3031760..3032101 (+) 342 WP_025285192.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=118250 AJ82_RS14485 WP_003152052.1 3026886..3027530(-) (comA) [Bacillus velezensis TrigoCor1448]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=118250 AJ82_RS14485 WP_003152052.1 3026886..3027530(-) (comA) [Bacillus velezensis TrigoCor1448]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment