Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AJ82_RS11890 Genome accession   NZ_CP007244
Coordinates   2516022..2516789 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis TrigoCor1448     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2511022..2521789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJ82_RS11870 (AJ82_13305) - 2511224..2512036 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  AJ82_RS11875 (AJ82_13310) ccpN 2512062..2512700 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  AJ82_RS11880 (AJ82_13315) glyS 2512801..2514840 (-) 2040 WP_025285009.1 glycine--tRNA ligase subunit beta -
  AJ82_RS11885 (AJ82_13320) glyQ 2514833..2515720 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  AJ82_RS11890 (AJ82_13325) recO 2516022..2516789 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  AJ82_RS19490 - 2516826..2516969 (-) 144 WP_007408286.1 YqzL family protein -
  AJ82_RS11895 (AJ82_13335) era 2517125..2518030 (-) 906 WP_025285010.1 GTPase Era -
  AJ82_RS11900 (AJ82_13340) - 2518020..2518421 (-) 402 WP_025285011.1 cytidine deaminase -
  AJ82_RS11905 (AJ82_13345) - 2518545..2518919 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  AJ82_RS11910 (AJ82_13350) ybeY 2518900..2519373 (-) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  AJ82_RS11915 (AJ82_13355) - 2519374..2521506 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=118238 AJ82_RS11890 WP_007408287.1 2516022..2516789(-) (recO) [Bacillus velezensis TrigoCor1448]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=118238 AJ82_RS11890 WP_007408287.1 2516022..2516789(-) (recO) [Bacillus velezensis TrigoCor1448]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment