Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AJ82_RS10360 Genome accession   NZ_CP007244
Coordinates   2184958..2185566 (+) Length   202 a.a.
NCBI ID   WP_025284918.1    Uniprot ID   -
Organism   Bacillus velezensis TrigoCor1448     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2179958..2190566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJ82_RS10320 (AJ82_11585) - 2181011..2181517 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  AJ82_RS10325 (AJ82_11590) - 2181656..2182069 (+) 414 WP_017418017.1 hypothetical protein -
  AJ82_RS10330 (AJ82_11595) - 2182099..2182533 (-) 435 WP_025284916.1 YppG family protein -
  AJ82_RS10335 (AJ82_11600) - 2182720..2182902 (+) 183 WP_003153532.1 YppF family protein -
  AJ82_RS10340 (AJ82_11605) - 2182941..2183309 (-) 369 WP_007409492.1 YppE family protein -
  AJ82_RS10345 (AJ82_11610) - 2183355..2183600 (-) 246 WP_015240083.1 DUF5446 family protein -
  AJ82_RS10350 (AJ82_11615) sspM 2183806..2183910 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  AJ82_RS10355 (AJ82_11620) - 2183954..2184916 (-) 963 WP_014418234.1 DUF2515 domain-containing protein -
  AJ82_RS10360 (AJ82_11625) recU 2184958..2185566 (+) 609 WP_025284918.1 Holliday junction resolvase RecU Machinery gene
  AJ82_RS10365 (AJ82_11630) - 2185605..2188388 (+) 2784 WP_025284919.1 PBP1A family penicillin-binding protein -
  AJ82_RS10370 (AJ82_11635) - 2188466..2188957 (-) 492 WP_007612186.1 YpoC family protein -
  AJ82_RS10375 (AJ82_11640) nth 2188954..2189613 (-) 660 WP_025284920.1 endonuclease III -
  AJ82_RS10380 (AJ82_11645) dnaD 2189632..2190330 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23636.77 Da        Isoelectric Point: 9.6949

>NTDB_id=118228 AJ82_RS10360 WP_025284918.1 2184958..2185566(+) (recU) [Bacillus velezensis TrigoCor1448]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEAVKLFVFWDRKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=118228 AJ82_RS10360 WP_025284918.1 2184958..2185566(+) (recU) [Bacillus velezensis TrigoCor1448]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
TTACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAAATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGTCAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment