Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AJ82_RS07275 Genome accession   NZ_CP007244
Coordinates   1422401..1422685 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis TrigoCor1448     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1417401..1427685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJ82_RS07255 (AJ82_08140) - 1418644..1419552 (+) 909 WP_025284668.1 ketopantoate reductase family protein -
  AJ82_RS07260 (AJ82_08145) - 1419584..1420816 (-) 1233 WP_007409644.1 aminopeptidase -
  AJ82_RS19915 - 1420917..1421051 (-) 135 WP_003154559.1 protein YkpC -
  AJ82_RS07265 (AJ82_08155) mreBH 1421123..1422130 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  AJ82_RS07275 (AJ82_08165) abrB 1422401..1422685 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AJ82_RS07280 (AJ82_08170) - 1422858..1424162 (+) 1305 WP_007409646.1 ATP-binding protein -
  AJ82_RS07285 (AJ82_08175) - 1424164..1424991 (+) 828 WP_025284670.1 gamma-glutamylcyclotransferase family protein -
  AJ82_RS07290 (AJ82_08180) ktrC 1425032..1425697 (+) 666 WP_025284671.1 Ktr system potassium transporter KtrC -
  AJ82_RS07295 (AJ82_08185) ade 1425846..1427579 (+) 1734 WP_025284672.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=118222 AJ82_RS07275 WP_003154557.1 1422401..1422685(+) (abrB) [Bacillus velezensis TrigoCor1448]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=118222 AJ82_RS07275 WP_003154557.1 1422401..1422685(+) (abrB) [Bacillus velezensis TrigoCor1448]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment