Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AJ82_RS00245 Genome accession   NZ_CP007244
Coordinates   45963..46253 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis TrigoCor1448     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40963..51253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AJ82_RS00205 (AJ82_00220) darA 40980..41309 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  AJ82_RS00210 (AJ82_00225) - 41322..41762 (+) 441 WP_025284079.1 DUF327 family protein -
  AJ82_RS00215 (AJ82_00230) holB 41774..42763 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  AJ82_RS00220 (AJ82_00235) ricT 42766..43593 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  AJ82_RS00225 (AJ82_00240) yabA 43608..43967 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  AJ82_RS00230 (AJ82_00245) - 44028..44771 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AJ82_RS00235 (AJ82_00250) - 44758..45057 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  AJ82_RS00240 (AJ82_00255) rsmI 45032..45913 (+) 882 WP_025284080.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AJ82_RS00245 (AJ82_00260) abrB 45963..46253 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  AJ82_RS00250 (AJ82_00265) metG 46737..48728 (+) 1992 WP_011996169.1 methionine--tRNA ligase -
  AJ82_RS00255 (AJ82_00270) - 48804..49571 (+) 768 WP_025284081.1 TatD family hydrolase -
  AJ82_RS00260 (AJ82_00275) - 49706..51031 (+) 1326 WP_163114158.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=118194 AJ82_RS00245 WP_169510469.1 45963..46253(-) (abrB) [Bacillus velezensis TrigoCor1448]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=118194 AJ82_RS00245 WP_169510469.1 45963..46253(-) (abrB) [Bacillus velezensis TrigoCor1448]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment