Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KHU1_RS18360 Genome accession   NZ_CP007242
Coordinates   3822164..3822454 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3817164..3827454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS18320 (KHU1_3575) darA 3817181..3817510 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  KHU1_RS18325 (KHU1_3576) - 3817523..3817963 (+) 441 WP_004264730.1 YaaR family protein -
  KHU1_RS18330 (KHU1_3577) holB 3817975..3818964 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  KHU1_RS18335 (KHU1_3578) ricT 3818967..3819794 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  KHU1_RS18340 (KHU1_3579) yabA 3819809..3820168 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  KHU1_RS18345 (KHU1_3580) - 3820229..3820972 (+) 744 WP_007409920.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  KHU1_RS18350 (KHU1_3581) - 3820959..3821258 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  KHU1_RS18355 (KHU1_3582) rsmI 3821233..3822114 (+) 882 WP_020953847.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KHU1_RS18360 (KHU1_3583) abrB 3822164..3822454 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  KHU1_RS18365 (KHU1_3584) metG 3822938..3824929 (+) 1992 WP_042635682.1 methionine--tRNA ligase -
  KHU1_RS18370 (KHU1_3585) - 3825005..3825772 (+) 768 WP_042635683.1 TatD family hydrolase -
  KHU1_RS18375 (KHU1_3586) - 3825907..3827232 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=118182 KHU1_RS18360 WP_169510469.1 3822164..3822454(-) (abrB) [Bacillus amyloliquefaciens KHG19]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=118182 KHU1_RS18360 WP_169510469.1 3822164..3822454(-) (abrB) [Bacillus amyloliquefaciens KHG19]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment