Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   KHU1_RS13525 Genome accession   NZ_CP007242
Coordinates   2826710..2826850 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus amyloliquefaciens KHG19     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2821710..2831850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS13500 (KHU1_2629) - 2822050..2822433 (-) 384 WP_007408674.1 hotdog fold thioesterase -
  KHU1_RS13505 (KHU1_2630) comA 2822455..2823099 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  KHU1_RS13510 (KHU1_2631) comP 2823180..2825471 (-) 2292 WP_042635452.1 histidine kinase Regulator
  KHU1_RS13515 (KHU1_2632) comX 2825483..2825647 (-) 165 WP_007613432.1 competence pheromone ComX -
  KHU1_RS13520 (KHU1_2633) - 2825647..2826558 (-) 912 WP_079891433.1 polyprenyl synthetase family protein -
  KHU1_RS13525 (KHU1_2634) degQ 2826710..2826850 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  KHU1_RS13530 (KHU1_2635) - 2827315..2827656 (+) 342 WP_042635453.1 hypothetical protein -
  KHU1_RS13535 (KHU1_2636) - 2827663..2828886 (-) 1224 WP_007408678.1 EAL and HDOD domain-containing protein -
  KHU1_RS13540 (KHU1_2637) - 2829016..2830482 (-) 1467 WP_020954301.1 nicotinate phosphoribosyltransferase -
  KHU1_RS13545 (KHU1_2638) - 2830500..2831051 (-) 552 WP_003152033.1 cysteine hydrolase family protein -
  KHU1_RS13550 (KHU1_2639) - 2831148..2831546 (-) 399 WP_042635454.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=118165 KHU1_RS13525 WP_003152043.1 2826710..2826850(-) (degQ) [Bacillus amyloliquefaciens KHG19]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=118165 KHU1_RS13525 WP_003152043.1 2826710..2826850(-) (degQ) [Bacillus amyloliquefaciens KHG19]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891

Multiple sequence alignment