Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   KHU1_RS11700 Genome accession   NZ_CP007242
Coordinates   2475300..2476052 (-) Length   250 a.a.
NCBI ID   WP_007408162.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2470300..2481052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS11675 (KHU1_2292) mreC 2470736..2471599 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  KHU1_RS11680 (KHU1_2293) mreB 2471630..2472643 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  KHU1_RS11685 (KHU1_2294) radC 2472735..2473430 (-) 696 WP_007408165.1 RadC family protein -
  KHU1_RS11690 (KHU1_2295) - 2473462..2474031 (-) 570 WP_007408164.1 Maf family protein -
  KHU1_RS11695 (KHU1_2296) - 2474172..2475173 (-) 1002 WP_039254352.1 SPOR domain-containing protein -
  KHU1_RS11700 (KHU1_2297) comC 2475300..2476052 (-) 753 WP_007408162.1 prepilin peptidase Machinery gene
  KHU1_RS11705 (KHU1_2298) - 2476192..2477484 (-) 1293 WP_007408161.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  KHU1_RS11710 (KHU1_2299) - 2477543..2480185 (-) 2643 WP_042635394.1 valine--tRNA ligase -
  KHU1_RS11715 (KHU1_2300) - 2480638..2480829 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27187.88 Da        Isoelectric Point: 9.4293

>NTDB_id=118158 KHU1_RS11700 WP_007408162.1 2475300..2476052(-) (comC) [Bacillus amyloliquefaciens KHG19]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=118158 KHU1_RS11700 WP_007408162.1 2475300..2476052(-) (comC) [Bacillus amyloliquefaciens KHG19]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTTATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588

Multiple sequence alignment