Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KHU1_RS09365 Genome accession   NZ_CP007242
Coordinates   1990115..1990723 (+) Length   202 a.a.
NCBI ID   WP_042635727.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1985115..1995723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS09325 (KHU1_1825) - 1986168..1986674 (-) 507 WP_007409495.1 PTS sugar transporter subunit IIA -
  KHU1_RS09330 (KHU1_1826) - 1986813..1987226 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  KHU1_RS09335 (KHU1_1827) - 1987256..1987690 (-) 435 WP_007409493.1 YppG family protein -
  KHU1_RS09340 (KHU1_1828) - 1987877..1988059 (+) 183 WP_003153532.1 YppF family protein -
  KHU1_RS09345 (KHU1_1829) - 1988098..1988466 (-) 369 WP_042635291.1 YppE family protein -
  KHU1_RS09350 (KHU1_1830) - 1988512..1988757 (-) 246 WP_007409491.1 DUF5446 family protein -
  KHU1_RS09355 sspM 1988963..1989067 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  KHU1_RS09360 (KHU1_1831) - 1989111..1990073 (-) 963 WP_032870042.1 DUF2515 domain-containing protein -
  KHU1_RS09365 (KHU1_1832) recU 1990115..1990723 (+) 609 WP_042635727.1 Holliday junction resolvase RecU Machinery gene
  KHU1_RS09370 (KHU1_1833) - 1990762..1993545 (+) 2784 WP_042635292.1 PBP1A family penicillin-binding protein -
  KHU1_RS09375 (KHU1_1834) - 1993623..1994114 (-) 492 WP_015240085.1 YpoC family protein -
  KHU1_RS09380 (KHU1_1835) nth 1994111..1994770 (-) 660 WP_007612187.1 endonuclease III -
  KHU1_RS09385 (KHU1_1836) dnaD 1994789..1995487 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.74 Da        Isoelectric Point: 9.5849

>NTDB_id=118141 KHU1_RS09365 WP_042635727.1 1990115..1990723(+) (recU) [Bacillus amyloliquefaciens KHG19]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
NNGRKSIRRDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=118141 KHU1_RS09365 WP_042635727.1 1990115..1990723(+) (recU) [Bacillus amyloliquefaciens KHG19]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACCGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAGAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment