Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KHU1_RS07280 Genome accession   NZ_CP007242
Coordinates   1461610..1462509 (+) Length   299 a.a.
NCBI ID   WP_042635190.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1456610..1467509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS07260 (KHU1_1407) - 1457300..1459003 (+) 1704 WP_042635189.1 hypothetical protein -
  KHU1_RS07265 (KHU1_1408) - 1459000..1459281 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  KHU1_RS07270 (KHU1_1409) sucC 1459456..1460613 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  KHU1_RS07275 (KHU1_1410) sucD 1460642..1461544 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  KHU1_RS07280 (KHU1_1411) dprA 1461610..1462509 (+) 900 WP_042635190.1 DNA-processing protein DprA Machinery gene
  KHU1_RS07285 (KHU1_1412) topA 1462691..1464766 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  KHU1_RS07290 (KHU1_1413) trmFO 1464831..1466138 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KHU1_RS07295 (KHU1_1414) xerC 1466208..1467125 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32878.05 Da        Isoelectric Point: 8.1570

>NTDB_id=118136 KHU1_RS07280 WP_042635190.1 1461610..1462509(+) (dprA) [Bacillus amyloliquefaciens KHG19]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPNPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWIIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=118136 KHU1_RS07280 WP_042635190.1 1461610..1462509(+) (dprA) [Bacillus amyloliquefaciens KHG19]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGAATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGATCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368

Multiple sequence alignment