Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   KHU1_RS06325 Genome accession   NZ_CP007242
Coordinates   1227195..1227791 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1222195..1232791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS06295 (KHU1_1216) - 1222408..1222863 (+) 456 WP_020955747.1 flavodoxin -
  KHU1_RS06300 (KHU1_1217) dapD 1222945..1223655 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  KHU1_RS06305 (KHU1_1218) - 1223726..1224850 (+) 1125 WP_007409624.1 N-acetyldiaminopimelate deacetylase -
  KHU1_RS06310 (KHU1_1219) - 1224911..1225156 (+) 246 WP_003154596.1 YkuS family protein -
  KHU1_RS06315 (KHU1_1220) - 1225190..1225996 (-) 807 WP_007409625.1 mechanosensitive ion channel family protein -
  KHU1_RS06320 (KHU1_1221) - 1226285..1226743 (+) 459 WP_007409626.1 TlpA disulfide reductase family protein -
  KHU1_RS06325 (KHU1_1222) rok 1227195..1227791 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  KHU1_RS06330 (KHU1_1223) - 1227812..1228804 (-) 993 WP_007409627.1 hypothetical protein -
  KHU1_RS06335 (KHU1_1224) - 1228950..1229552 (+) 603 WP_042635153.1 molybdenum cofactor guanylyltransferase -
  KHU1_RS06340 (KHU1_1225) - 1229604..1230623 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  KHU1_RS06345 (KHU1_1226) glp 1230641..1231933 (+) 1293 WP_007611114.1 gephyrin-like molybdotransferase Glp -
  KHU1_RS06350 (KHU1_1227) mobB 1231894..1232415 (+) 522 WP_032868152.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=118134 KHU1_RS06325 WP_003154591.1 1227195..1227791(+) (rok) [Bacillus amyloliquefaciens KHG19]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=118134 KHU1_RS06325 WP_003154591.1 1227195..1227791(+) (rok) [Bacillus amyloliquefaciens KHG19]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGTGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment