Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   KHU1_RS06225 Genome accession   NZ_CP007242
Coordinates   1211328..1211792 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens KHG19     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1206328..1216792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS06210 (KHU1_1199) - 1206807..1208627 (+) 1821 WP_017417673.1 PAS domain-containing protein -
  KHU1_RS06215 (KHU1_1200) - 1208608..1209821 (-) 1214 Protein_1226 aminotransferase A -
  KHU1_RS20015 - 1210022..1210183 (-) 162 WP_007409608.1 hypothetical protein -
  KHU1_RS06220 (KHU1_1201) cheV 1210372..1211283 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  KHU1_RS06225 (KHU1_1202) kre 1211328..1211792 (-) 465 WP_003154622.1 YkyB family protein Regulator
  KHU1_RS06230 (KHU1_1203) - 1211915..1213207 (-) 1293 WP_032868138.1 MFS transporter -
  KHU1_RS06235 (KHU1_1204) - 1213283..1213777 (-) 495 WP_095284082.1 L,D-transpeptidase family protein -
  KHU1_RS06240 (KHU1_1205) - 1213852..1214715 (-) 864 WP_007409612.1 metallophosphoesterase -
  KHU1_RS06245 (KHU1_1206) fadH 1214860..1215624 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  KHU1_RS06250 (KHU1_1207) - 1215738..1216286 (+) 549 WP_020955743.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=118133 KHU1_RS06225 WP_003154622.1 1211328..1211792(-) (kre) [Bacillus amyloliquefaciens KHG19]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=118133 KHU1_RS06225 WP_003154622.1 1211328..1211792(-) (kre) [Bacillus amyloliquefaciens KHG19]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment