Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   KHU1_RS04200 Genome accession   NZ_CP007242
Coordinates   843396..843974 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus amyloliquefaciens KHG19     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 838396..848974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS20365 - 838899..839414 (-) 516 WP_370529535.1 methyl-accepting chemotaxis protein -
  KHU1_RS20370 - 839706..840293 (-) 588 Protein_809 protoglobin domain-containing protein -
  KHU1_RS04185 (KHU1_0796) - 840312..841835 (-) 1524 WP_042635032.1 FAD-dependent oxidoreductase -
  KHU1_RS04190 (KHU1_0797) - 841960..842817 (+) 858 WP_042635033.1 SDR family oxidoreductase -
  KHU1_RS04195 (KHU1_0798) - 842847..843080 (-) 234 WP_007409189.1 IDEAL domain-containing protein -
  KHU1_RS04200 (KHU1_0799) comK 843396..843974 (+) 579 WP_003155179.1 competence protein ComK Regulator
  KHU1_RS04205 (KHU1_0800) - 844120..844488 (+) 369 WP_042635034.1 iron chaperone -
  KHU1_RS04210 (KHU1_0801) - 844515..844886 (+) 372 WP_042635035.1 iron chaperone -
  KHU1_RS04215 (KHU1_0802) - 844933..846144 (-) 1212 WP_032866164.1 GNAT family N-acetyltransferase -
  KHU1_RS04220 (KHU1_0803) - 846301..847011 (-) 711 WP_042635036.1 YrpD family protein -
  KHU1_RS04225 (KHU1_0804) - 847207..847476 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  KHU1_RS04230 (KHU1_0805) - 847509..847826 (-) 318 WP_003155166.1 YbjQ family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=118122 KHU1_RS04200 WP_003155179.1 843396..843974(+) (comK) [Bacillus amyloliquefaciens KHG19]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=118122 KHU1_RS04200 WP_003155179.1 843396..843974(+) (comK) [Bacillus amyloliquefaciens KHG19]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCTGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment