Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   KHU1_RS03135 Genome accession   NZ_CP007242
Coordinates   650703..651494 (+) Length   263 a.a.
NCBI ID   WP_015239427.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 645703..656494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS03115 (KHU1_0603) - 647697..648581 (+) 885 WP_042634975.1 PhzF family phenazine biosynthesis isomerase -
  KHU1_RS03120 (KHU1_0604) - 648658..649242 (+) 585 WP_007408549.1 nitroreductase family protein -
  KHU1_RS03125 (KHU1_0605) - 649282..649473 (-) 192 WP_003155508.1 YfhD family protein -
  KHU1_RS19260 - 649544..649654 (-) 111 WP_003155504.1 YfhE family protein -
  KHU1_RS03130 (KHU1_0606) - 649712..650611 (-) 900 WP_042634976.1 TIGR01777 family oxidoreductase -
  KHU1_RS03135 (KHU1_0607) recX 650703..651494 (+) 792 WP_015239427.1 recombination regulator RecX Regulator
  KHU1_RS03140 (KHU1_0608) - 651501..651815 (+) 315 WP_007408553.1 YfhH family protein -
  KHU1_RS03145 (KHU1_0609) - 651960..653153 (+) 1194 WP_157872157.1 MFS transporter -
  KHU1_RS03150 (KHU1_0610) - 653193..653582 (-) 390 WP_042634977.1 DUF2606 family protein -
  KHU1_RS03155 (KHU1_0611) - 653545..654456 (-) 912 WP_042634978.1 trypsin-like serine peptidase -
  KHU1_RS03160 (KHU1_0612) - 654601..654753 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  KHU1_RS03165 (KHU1_0613) - 654877..655146 (+) 270 WP_003155492.1 YfhJ family protein -
  KHU1_RS03170 (KHU1_0614) - 655274..655801 (+) 528 WP_015417063.1 SH3 domain-containing protein -
  KHU1_RS03175 (KHU1_0615) - 655887..656222 (+) 336 WP_007408558.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30935.10 Da        Isoelectric Point: 5.8035

>NTDB_id=118117 KHU1_RS03135 WP_015239427.1 650703..651494(+) (recX) [Bacillus amyloliquefaciens KHG19]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYSYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=118117 KHU1_RS03135 WP_015239427.1 650703..651494(+) (recX) [Bacillus amyloliquefaciens KHG19]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACAGCTACTT
AAATGACAAAGAATTTGCCGAAGCTTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAGGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAAACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGTTATGACGGCAGTTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795

Multiple sequence alignment