Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KHU1_RS00765 Genome accession   NZ_CP007242
Coordinates   157171..157608 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 152171..162608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS00740 (KHU1_0143) - 153193..154327 (+) 1135 Protein_142 zinc-dependent alcohol dehydrogenase -
  KHU1_RS00745 (KHU1_0144) - 154342..154776 (+) 435 WP_007409358.1 RDD family protein -
  KHU1_RS00750 (KHU1_0145) - 154893..155171 (+) 279 WP_263612330.1 YckD family protein -
  KHU1_RS00755 (KHU1_0146) - 155275..156711 (+) 1437 WP_042634804.1 glycoside hydrolase family 1 protein -
  KHU1_RS00760 (KHU1_0147) nin/comJ 156752..157150 (-) 399 WP_020955304.1 competence protein ComJ Regulator
  KHU1_RS00765 (KHU1_0148) nucA/comI 157171..157608 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KHU1_RS00770 (KHU1_0149) hxlB 157966..158523 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  KHU1_RS00775 (KHU1_0150) hxlA 158520..159155 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  KHU1_RS00780 (KHU1_0151) - 159387..159749 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=118112 KHU1_RS00765 WP_003156588.1 157171..157608(-) (nucA/comI) [Bacillus amyloliquefaciens KHG19]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=118112 KHU1_RS00765 WP_003156588.1 157171..157608(-) (nucA/comI) [Bacillus amyloliquefaciens KHG19]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment