Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   STAB904_RS06830 Genome accession   NZ_CP007241
Coordinates   1379226..1379951 (-) Length   241 a.a.
NCBI ID   WP_038434223.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1E1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1374226..1384951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAB904_RS06795 (STAB904_07620) rnpM 1374260..1374556 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  STAB904_RS06800 (STAB904_07625) nusA 1374572..1375729 (-) 1158 WP_002988817.1 transcription termination factor NusA -
  STAB904_RS06805 (STAB904_07630) rimP 1375904..1376440 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  STAB904_RS06815 (STAB904_07640) trmB 1376699..1377334 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  STAB904_RS06820 (STAB904_07645) ccrZ 1377334..1378125 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  STAB904_RS06825 (STAB904_07650) - 1378189..1379223 (-) 1035 WP_038434222.1 ABC transporter permease -
  STAB904_RS06830 (STAB904_07655) pptA 1379226..1379951 (-) 726 WP_038434223.1 ABC transporter ATP-binding protein Regulator
  STAB904_RS06835 (STAB904_07660) - 1380023..1380442 (+) 420 WP_011285081.1 HIT family protein -
  STAB904_RS06840 (STAB904_07665) - 1380439..1380795 (+) 357 WP_038434224.1 hypothetical protein -
  STAB904_RS06845 (STAB904_07670) brpA 1380906..1382189 (-) 1284 WP_002994335.1 biofilm formation/cell division transcriptional regulator BrpA -
  STAB904_RS06850 (STAB904_07675) - 1382198..1382722 (-) 525 WP_038434225.1 GNAT family N-acetyltransferase -
  STAB904_RS06855 (STAB904_07680) tsaE 1382697..1383158 (-) 462 WP_002983367.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  STAB904_RS06860 (STAB904_07685) - 1383312..1384772 (-) 1461 WP_038434226.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26664.72 Da        Isoelectric Point: 4.5624

>NTDB_id=118098 STAB904_RS06830 WP_038434223.1 1379226..1379951(-) (pptA) [Streptococcus pyogenes strain 1E1]
MLNIKNLTGGYHNIPVLNDVSFSVDNGELVGLIGLNGAGKSTTINEIIGFLKPYQGSISIDGLTLAENAVAYRQKIGFIP
ETPSLYEELTLSEHINTVAMAYDIDLEVAQKRAQPFLEMFRLTDKLEWFPVNFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIQTLEVEKAKGKSILMSTHVLDSAERMCDRFVVLHHGQVRAQGTLADLQEAFGDRSASLNDIYLALTKE
D

Nucleotide


Download         Length: 726 bp        

>NTDB_id=118098 STAB904_RS06830 WP_038434223.1 1379226..1379951(-) (pptA) [Streptococcus pyogenes strain 1E1]
ATGTTAAACATTAAAAATCTAACAGGAGGATATCACAATATCCCTGTTTTAAACGATGTCTCATTTTCTGTAGACAATGG
AGAGTTAGTCGGTTTGATCGGGCTAAATGGTGCTGGAAAGTCAACAACTATCAACGAAATTATTGGCTTTTTGAAGCCTT
ATCAAGGAAGTATTTCTATTGATGGTTTAACTCTAGCAGAAAATGCAGTTGCCTACCGTCAAAAAATAGGTTTTATCCCA
GAAACTCCTAGTCTCTATGAAGAATTGACCTTATCAGAGCATATCAACACCGTAGCTATGGCTTATGATATCGACTTAGA
AGTGGCACAAAAACGAGCACAACCTTTCTTGGAAATGTTTCGTTTAACTGACAAACTTGAATGGTTTCCTGTCAATTTTT
CTAAAGGGATGAAACAAAAAGTCATGATTATTTGTGCCTTTGTCATTGATCCAAGTCTATTTATTCTTGATGAACCATTC
TTAGGGTTAGACCCTTTAGCTATTTCAGACTTAATCCAAACGCTAGAAGTCGAAAAAGCAAAAGGAAAATCTATTTTGAT
GAGTACACATGTTTTGGACTCTGCTGAAAGAATGTGTGATCGTTTTGTGGTTTTGCATCATGGACAAGTTCGTGCCCAAG
GAACTCTTGCTGACTTGCAAGAAGCTTTTGGTGATCGTTCAGCGAGCTTAAATGATATCTATCTTGCATTAACAAAAGAG
GATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.385

99.17

0.718
  pptA Streptococcus thermophilus LMD-9

71.548

99.17

0.71

Multiple sequence alignment