Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   STAB1101_RS01320 Genome accession   NZ_CP007240
Coordinates   251236..252162 (+) Length   308 a.a.
NCBI ID   WP_002986004.1    Uniprot ID   Q1JNF8
Organism   Streptococcus pyogenes strain 7F7     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 246236..257162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAB1101_RS01310 (STAB1101_01310) amiA 247699..249669 (+) 1971 WP_002992224.1 peptide ABC transporter substrate-binding protein Regulator
  STAB1101_RS01315 (STAB1101_01315) amiC 249734..251236 (+) 1503 WP_002992227.1 ABC transporter permease Regulator
  STAB1101_RS01320 (STAB1101_01320) amiD 251236..252162 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  STAB1101_RS01325 (STAB1101_01325) amiE 252171..253241 (+) 1071 WP_002992231.1 ABC transporter ATP-binding protein Regulator
  STAB1101_RS01330 (STAB1101_01330) amiF 253234..254157 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  STAB1101_RS09075 - 254195..254284 (-) 90 WP_109821088.1 IS3 family transposase -
  STAB1101_RS08790 (STAB1101_01335) - 254305..254484 (-) 180 WP_014635282.1 hypothetical protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34862.81 Da        Isoelectric Point: 8.5670

>NTDB_id=118019 STAB1101_RS01320 WP_002986004.1 251236..252162(+) (amiD) [Streptococcus pyogenes strain 7F7]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=118019 STAB1101_RS01320 WP_002986004.1 251236..252162(+) (amiD) [Streptococcus pyogenes strain 7F7]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCCATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCTAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1JNF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.701

100

0.737
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731

Multiple sequence alignment