Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   bpln_RS16105 Genome accession   NZ_CP007212
Coordinates   3759306..3760817 (+) Length   503 a.a.
NCBI ID   WP_042626037.1    Uniprot ID   -
Organism   Burkholderia plantarii strain ATCC 43733     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3761502..3770273 3759306..3760817 flank 685


Gene organization within MGE regions


Location: 3759306..3770273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  bpln_RS16105 (bpln_1g31910) rpoN/rpoN1 3759306..3760817 (+) 1512 WP_042626037.1 RNA polymerase factor sigma-54 Machinery gene
  bpln_RS16110 (bpln_1g31920) hpf 3760969..3761328 (+) 360 WP_042626038.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  bpln_RS16115 (bpln_1g31930) ptsN 3761544..3762056 (+) 513 WP_055139272.1 PTS IIA-like nitrogen regulatory protein PtsN -
  bpln_RS16120 (bpln_1g31940) hprK 3762197..3763165 (+) 969 WP_015877041.1 HPr(Ser) kinase/phosphatase -
  bpln_RS16125 (bpln_1g31950) rapZ 3763239..3764132 (+) 894 WP_042626040.1 RNase adapter RapZ -
  bpln_RS16130 (bpln_1g31960) - 3764163..3764798 (+) 636 WP_042626041.1 LON peptidase substrate-binding domain-containing protein -
  bpln_RS16135 (bpln_1g31970) mutY 3764854..3765963 (-) 1110 WP_055139273.1 A/G-specific adenine glycosylase -
  bpln_RS16140 (bpln_1g31980) mutM 3765968..3766795 (-) 828 WP_055139274.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  bpln_RS16145 (bpln_1g31990) - 3766883..3768730 (+) 1848 WP_055139275.1 tetratricopeptide repeat protein -
  bpln_RS16150 (bpln_1g32000) lolB 3768727..3769356 (+) 630 WP_042626045.1 lipoprotein insertase outer membrane protein LolB -
  bpln_RS16155 (bpln_1g32010) ispE 3769395..3770273 (+) 879 WP_055139276.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55163.02 Da        Isoelectric Point: 4.8354

>NTDB_id=117852 bpln_RS16105 WP_042626037.1 3759306..3760817(+) (rpoN/rpoN1) [Burkholderia plantarii strain ATCC 43733]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDDEWIASPLRVAADGSLIAQTPPSSTPEPMQ
GASSGSDSSSGERSERDDASGGDDYDSYNSGDNDSGQWNLDDYGRASGASDDDDLPPLQVHETSTSLRDHLSAQLRVTQA
SPRDRALITFLIESLDDDGYLGATLDEVHADLPEELEVELDELAAALALLHSFDPAGVGARSASECLRLQLIRLDPSPTR
ALALDIVSQHLELLAARDFTRLRKQLKANDDELRDAHALIRSLEPFPGAAYGKAEADYVVPDIMVKKSGQNWLAELNPEV
VPKLRINHLYANILRNSRGDPGAGSLKQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREIADT
LGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVV
ARRTVAKYREALRIPAVNLRKSL

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=117852 bpln_RS16105 WP_042626037.1 3759306..3760817(+) (rpoN/rpoN1) [Burkholderia plantarii strain ATCC 43733]
ATGAAAGCCAGCCTCCAACTCCGCCTGTCGCAGCACCTCGCGCTGACCCCCCAGTTGCAGCAGTCGATCCGGCTGCTGCA
ACTGTCGACGCTCGAACTGCAGCAGGAAGTCGCGATGGCCGTCGCGCAGAACCCGCTGCTCGAAAACGACGACGAATGGA
TCGCGAGCCCGCTGCGCGTGGCCGCCGACGGCTCGCTGATCGCGCAGACGCCGCCGTCCTCGACGCCCGAGCCGATGCAG
GGCGCCTCGTCCGGCTCCGACTCGTCCTCGGGTGAGCGCAGCGAACGCGACGATGCCTCGGGCGGCGACGACTACGACAG
CTACAACAGCGGCGACAACGATTCGGGCCAGTGGAATCTCGACGACTACGGCCGCGCCTCGGGCGCCTCCGACGACGACG
ATCTCCCGCCGCTACAAGTCCACGAGACCTCGACCTCGCTGCGCGACCATCTGTCGGCGCAGCTGCGCGTCACGCAGGCG
AGCCCGCGCGACCGCGCGCTGATCACGTTCCTGATCGAATCGCTCGACGATGACGGCTACCTCGGCGCGACGCTCGACGA
AGTCCACGCCGACTTGCCGGAAGAACTCGAGGTCGAACTCGACGAGCTGGCCGCCGCGCTCGCGCTGCTGCACAGCTTCG
ATCCGGCCGGCGTCGGCGCCCGTTCGGCGTCCGAATGCCTGCGCCTGCAGCTGATCCGGCTCGATCCGTCCCCCACGCGT
GCGCTCGCGCTCGACATCGTCTCCCAGCACCTCGAACTGCTCGCCGCGCGCGATTTCACGCGGCTGCGCAAGCAGCTGAA
GGCGAACGACGACGAGCTGCGCGACGCGCATGCGCTGATCCGCTCGCTCGAGCCGTTCCCGGGCGCGGCCTACGGCAAGG
CCGAGGCCGACTACGTGGTGCCCGACATCATGGTCAAGAAGAGCGGCCAGAACTGGCTCGCGGAGCTGAACCCGGAGGTC
GTGCCGAAACTGCGCATCAACCACCTGTACGCCAACATCCTGCGCAACAGCCGCGGCGATCCGGGTGCCGGCTCGCTGAA
GCAGCAGCTCCAGGAAGCGCGCTGGCTGATCAAGAACATCCAGCAGCGATTCGAGACGATCCTGCGTGTCGCGCAGGCGA
TCGTCGAGCGTCAGAAGAACTTTTTTGCACATGGCGAAATCGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACG
CTGGGCCTACACGAGTCAACTGTCTCGCGTGTGACAACCGGCAAGTACATGCTGACCCCGTTCGGCACTCTTGAATTTAA
GTACTTCTTCGGATCGCACGTTTCGACGGATACCGGTGGCGCCGCCTCATCCACGGCGATCCGCGCCCTCATCAAGCAAC
TGATAGGAGCCGAAGACCCGAAATCTCCTCTATCGGACAGCCGAATCGCCGAACTGCTGGCGGAACAGGGATTCGTGGTC
GCGCGCCGCACGGTCGCGAAGTATCGCGAAGCCCTCAGGATCCCGGCAGTCAACCTGCGCAAGTCTCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(140-330)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(346-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

67.85

100

0.684

Multiple sequence alignment