Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RG60_RS02360 Genome accession   NZ_CP010206
Coordinates   453618..454133 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain M11     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 448618..459133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG60_RS02320 (RG60_02190) csrA 449345..449530 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  RG60_RS02345 (RG60_02215) yqaB 450848..451414 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  RG60_RS02350 (RG60_02220) yqaA 451411..451839 (+) 429 WP_001287454.1 YqaA family protein -
  RG60_RS02355 (RG60_02225) gshA 451912..453468 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  RG60_RS02360 (RG60_02230) luxS 453618..454133 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  RG60_RS02365 (RG60_02235) emrB 454197..455735 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  RG60_RS02370 (RG60_02240) emrA 455752..456924 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  RG60_RS02375 (RG60_02245) emrR 457051..457581 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  RG60_RS02380 (RG60_02250) ygaH 457672..458007 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  RG60_RS02385 (RG60_02255) ygaZ 457997..458734 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=117849 RG60_RS02360 WP_001130207.1 453618..454133(+) (luxS) [Escherichia coli strain M11]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=117849 RG60_RS02360 WP_001130207.1 453618..454133(+) (luxS) [Escherichia coli strain M11]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment