Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   BE24_RS07355 Genome accession   NZ_CP007208
Coordinates   1513014..1513730 (+) Length   238 a.a.
NCBI ID   WP_029378924.1    Uniprot ID   A0A418I5B6
Organism   Staphylococcus xylosus strain HKUOPL8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1508014..1518730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE24_RS07330 (BE24_07625) - 1508425..1509054 (+) 630 WP_029378929.1 nitroreductase family protein -
  BE24_RS07335 (BE24_07635) - 1509419..1510204 (+) 786 WP_029378928.1 carbon-nitrogen family hydrolase -
  BE24_RS07340 (BE24_07640) - 1510971..1511540 (+) 570 WP_029378927.1 accessory gene regulator AgrB -
  BE24_RS07345 (BE24_07645) agrD 1511543..1511680 (+) 138 WP_029378926.1 cyclic lactone autoinducer peptide AgrD -
  BE24_RS07350 (BE24_07650) agrC 1511706..1513001 (+) 1296 WP_029378925.1 quorum-sensing sensor histidine kinase AgrC -
  BE24_RS07355 (BE24_07655) agrA 1513014..1513730 (+) 717 WP_029378924.1 quorum-sensing response regulator AgrA Regulator
  BE24_RS07360 (BE24_07660) - 1513767..1514732 (-) 966 WP_029378923.1 carbohydrate kinase family protein -
  BE24_RS07365 (BE24_07665) - 1514729..1516213 (-) 1485 WP_038678866.1 sucrose-6-phosphate hydrolase -
  BE24_RS07370 (BE24_07670) - 1516298..1517260 (-) 963 WP_029378921.1 LacI family DNA-binding transcriptional regulator -
  BE24_RS07375 (BE24_07675) - 1517842..1518066 (-) 225 WP_029378920.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27939.77 Da        Isoelectric Point: 5.4095

>NTDB_id=117768 BE24_RS07355 WP_029378924.1 1513014..1513730(+) (agrA) [Staphylococcus xylosus strain HKUOPL8]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATADPYDILERSKNINDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRVIDCLETSESRLKLLSKESSVETIELKRGSNSIYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGNLKEIDQLDKRFFRCHNSFVVNRHNIESIDSKSRVVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=117768 BE24_RS07355 WP_029378924.1 1513014..1513730(+) (agrA) [Staphylococcus xylosus strain HKUOPL8]
GTGAAAATATTCATTTGTGAAGATGATGAAAGACAACGTGAACATATGGTTTCAATTATAAATAACTATATTATGATTGA
AGAAAAACCAATGGAAATTGAAGTTGCGACAGCTGATCCTTATGACATTTTAGAACGCTCAAAGAACATTAATGATATAG
GATGTTACTTTTTAGATATTCAACTAGAAGCTGACATCAACGGTATCAAGCTTGCAAGTGAAATACGTAAACATGATCCG
GTCGGCAATATCATTTTTGTTACAAGTCATAGTGAACTGACATACTTAACATTTGTCTACAAGGTTGCAGCAATGGATTT
CATTTTCAAAGATGATCCAGACGAATTAAAATCAAGAGTGATTGATTGCTTAGAAACATCTGAGTCACGACTAAAACTAC
TTTCAAAAGAAAGCAGCGTCGAAACAATAGAATTAAAACGTGGTAGCAATTCTATTTATGTGCAATATGACGATGTGATG
TTCTTCGAATCATCTAGTAAATCCCATCGCTTAATCGCACATCTCGACAATCGTCAAATCGAATTTTATGGAAACCTTAA
AGAAATTGATCAGTTAGATAAACGCTTCTTTAGATGTCATAATAGTTTTGTAGTAAATAGACACAATATTGAGTCCATCG
ACTCTAAATCACGCGTAGTTTATTTTAAAAACAATGAGCATTGTTATGCTTCTGTAAGAAATGTCAAAAAGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A418I5B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

84.874

100

0.849

Multiple sequence alignment