Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | BE24_RS04880 | Genome accession | NZ_CP007208 |
| Coordinates | 1039041..1040015 (-) | Length | 324 a.a. |
| NCBI ID | WP_038678556.1 | Uniprot ID | - |
| Organism | Staphylococcus xylosus strain HKUOPL8 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1034041..1045015
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BE24_RS04840 (BE24_05020) | gcvT | 1034580..1035671 (-) | 1092 | WP_038678550.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| BE24_RS04845 (BE24_05025) | - | 1035860..1036360 (-) | 501 | WP_038679682.1 | shikimate kinase | - |
| BE24_RS04855 (BE24_05035) | comGF | 1036540..1036971 (-) | 432 | WP_231291662.1 | competence type IV pilus minor pilin ComGF | - |
| BE24_RS04860 (BE24_05040) | - | 1036955..1037254 (-) | 300 | WP_029377194.1 | hypothetical protein | - |
| BE24_RS04865 (BE24_05045) | comGD | 1037241..1037687 (-) | 447 | WP_038679684.1 | competence type IV pilus minor pilin ComGD | - |
| BE24_RS04870 (BE24_05050) | comGC | 1037665..1037982 (-) | 318 | WP_029377192.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| BE24_RS04875 (BE24_05055) | comGB | 1038002..1039069 (-) | 1068 | WP_051664335.1 | competence type IV pilus assembly protein ComGB | - |
| BE24_RS04880 (BE24_05060) | comGA | 1039041..1040015 (-) | 975 | WP_038678556.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| BE24_RS04885 (BE24_05065) | - | 1040114..1040737 (-) | 624 | WP_029377189.1 | MBL fold metallo-hydrolase | - |
| BE24_RS04890 (BE24_05070) | - | 1040739..1041062 (-) | 324 | WP_029377188.1 | MTH1187 family thiamine-binding protein | - |
| BE24_RS04895 (BE24_05075) | - | 1041062..1042048 (-) | 987 | WP_029377187.1 | glucokinase | - |
| BE24_RS04900 (BE24_05080) | - | 1042430..1042627 (-) | 198 | WP_029377186.1 | YqgQ family protein | - |
| BE24_RS04905 (BE24_05085) | - | 1042611..1044068 (-) | 1458 | WP_029377185.1 | rhomboid family intramembrane serine protease | - |
| BE24_RS04910 (BE24_05090) | - | 1044080..1044622 (-) | 543 | WP_029377184.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| BE24_RS04915 (BE24_05095) | rpmG | 1044753..1044902 (-) | 150 | WP_002483181.1 | 50S ribosomal protein L33 | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37124.26 Da Isoelectric Point: 9.2411
>NTDB_id=117757 BE24_RS04880 WP_038678556.1 1039041..1040015(-) (comGA) [Staphylococcus xylosus strain HKUOPL8]
MNLLFNSMIEKAISNDASDIHFIPADKEVMIKFRIRDDLKSIETLQLNTYLKLLTYMKYQAGLDVSKHNAAQSGRYIYKL
KQIYFLRISTLPLSLGNESCVIRIIPQYFQKHKNNQNITHLYNLMNKKQGLILLSGPTGSGKSTLMYHMLSYAKENLNLN
IITIEEPVEQLINGITQISLNEKAGINYETSFKAILRCDPDIILIGEIRDANVAKHVIQASLSGHLVLSTIHASNCKGVI
LRLLEMGITVQQLIQSITSILNQRLITNVKGERELVYEQITKEDVYHFFKNSYTLPKEFHNLSYKLNKMSKEGMICETSM
ERYL
MNLLFNSMIEKAISNDASDIHFIPADKEVMIKFRIRDDLKSIETLQLNTYLKLLTYMKYQAGLDVSKHNAAQSGRYIYKL
KQIYFLRISTLPLSLGNESCVIRIIPQYFQKHKNNQNITHLYNLMNKKQGLILLSGPTGSGKSTLMYHMLSYAKENLNLN
IITIEEPVEQLINGITQISLNEKAGINYETSFKAILRCDPDIILIGEIRDANVAKHVIQASLSGHLVLSTIHASNCKGVI
LRLLEMGITVQQLIQSITSILNQRLITNVKGERELVYEQITKEDVYHFFKNSYTLPKEFHNLSYKLNKMSKEGMICETSM
ERYL
Nucleotide
Download Length: 975 bp
>NTDB_id=117757 BE24_RS04880 WP_038678556.1 1039041..1040015(-) (comGA) [Staphylococcus xylosus strain HKUOPL8]
TTGAATCTATTGTTTAATAGTATGATTGAAAAGGCAATTAGTAATGATGCATCAGATATTCATTTTATCCCCGCTGATAA
AGAAGTAATGATTAAATTTAGAATACGTGATGATTTGAAGTCTATAGAAACATTGCAATTAAATACGTATTTAAAATTAT
TAACCTATATGAAATACCAAGCTGGATTAGATGTCTCTAAACATAATGCTGCACAGAGTGGTAGATATATTTATAAATTA
AAACAAATTTACTTCCTTAGAATATCAACGCTTCCTTTATCACTAGGAAATGAAAGCTGTGTTATTAGGATTATTCCGCA
ATATTTTCAAAAGCATAAAAATAATCAGAACATAACGCATTTATATAATCTAATGAATAAAAAACAAGGATTAATTTTAT
TAAGTGGACCTACTGGCTCTGGAAAAAGTACGTTAATGTATCACATGTTATCTTATGCTAAAGAGAACTTAAATTTAAAT
ATAATTACAATTGAAGAACCCGTTGAACAATTAATAAATGGCATAACTCAAATATCTTTAAATGAAAAGGCAGGGATAAA
TTATGAAACTTCTTTTAAAGCTATTTTACGCTGCGATCCAGATATTATCTTGATCGGAGAAATAAGAGATGCAAACGTAG
CTAAACATGTCATACAAGCCAGTTTAAGTGGTCATTTAGTACTTTCGACAATTCATGCTAGTAATTGCAAAGGAGTTATT
TTAAGACTGCTAGAAATGGGGATAACGGTTCAACAACTCATACAATCAATCACTAGCATATTAAATCAAAGGCTTATTAC
TAACGTAAAAGGTGAAAGAGAGCTTGTATATGAACAGATAACTAAAGAAGATGTTTATCACTTCTTTAAAAATAGCTATA
CATTACCCAAAGAATTTCATAACTTATCTTATAAACTAAATAAAATGTCAAAAGAGGGGATGATATGTGAAACATCAATG
GAACGTTATCTCTAA
TTGAATCTATTGTTTAATAGTATGATTGAAAAGGCAATTAGTAATGATGCATCAGATATTCATTTTATCCCCGCTGATAA
AGAAGTAATGATTAAATTTAGAATACGTGATGATTTGAAGTCTATAGAAACATTGCAATTAAATACGTATTTAAAATTAT
TAACCTATATGAAATACCAAGCTGGATTAGATGTCTCTAAACATAATGCTGCACAGAGTGGTAGATATATTTATAAATTA
AAACAAATTTACTTCCTTAGAATATCAACGCTTCCTTTATCACTAGGAAATGAAAGCTGTGTTATTAGGATTATTCCGCA
ATATTTTCAAAAGCATAAAAATAATCAGAACATAACGCATTTATATAATCTAATGAATAAAAAACAAGGATTAATTTTAT
TAAGTGGACCTACTGGCTCTGGAAAAAGTACGTTAATGTATCACATGTTATCTTATGCTAAAGAGAACTTAAATTTAAAT
ATAATTACAATTGAAGAACCCGTTGAACAATTAATAAATGGCATAACTCAAATATCTTTAAATGAAAAGGCAGGGATAAA
TTATGAAACTTCTTTTAAAGCTATTTTACGCTGCGATCCAGATATTATCTTGATCGGAGAAATAAGAGATGCAAACGTAG
CTAAACATGTCATACAAGCCAGTTTAAGTGGTCATTTAGTACTTTCGACAATTCATGCTAGTAATTGCAAAGGAGTTATT
TTAAGACTGCTAGAAATGGGGATAACGGTTCAACAACTCATACAATCAATCACTAGCATATTAAATCAAAGGCTTATTAC
TAACGTAAAAGGTGAAAGAGAGCTTGTATATGAACAGATAACTAAAGAAGATGTTTATCACTTCTTTAAAAATAGCTATA
CATTACCCAAAGAATTTCATAACTTATCTTATAAACTAAATAAAATGTCAAAAGAGGGGATGATATGTGAAACATCAATG
GAACGTTATCTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
62.346 |
100 |
0.623 |
| comGA | Staphylococcus aureus N315 |
62.346 |
100 |
0.623 |