Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   BE24_RS02390 Genome accession   NZ_CP007208
Coordinates   500914..501477 (+) Length   187 a.a.
NCBI ID   WP_029379122.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain HKUOPL8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 495914..506477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE24_RS02365 (BE24_02470) - 496789..498297 (+) 1509 WP_029379126.1 bifunctional metallophosphatase/5'-nucleotidase -
  BE24_RS02370 (BE24_02475) - 498364..498966 (-) 603 WP_029379125.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  BE24_RS02375 (BE24_02480) - 498972..499157 (-) 186 WP_002483735.1 YkvS family protein -
  BE24_RS02380 (BE24_02485) - 499357..500343 (+) 987 WP_029379124.1 lipoate--protein ligase -
  BE24_RS02385 (BE24_02490) - 500443..500661 (-) 219 WP_029379123.1 IDEAL domain-containing protein -
  BE24_RS02390 (BE24_02495) comK/comK1 500914..501477 (+) 564 WP_029379122.1 competence protein ComK Regulator
  BE24_RS02405 (BE24_02510) isaB 502759..503250 (+) 492 WP_038678248.1 immunodominant staphylococcal antigen IsaB family protein -
  BE24_RS02410 (BE24_02520) - 503821..504033 (-) 213 WP_029379120.1 TM2 domain-containing protein -
  BE24_RS02415 (BE24_02525) - 504214..504783 (+) 570 WP_029379119.1 GNAT family N-acetyltransferase -
  BE24_RS02420 (BE24_02530) - 504857..505795 (-) 939 WP_029379118.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 21888.24 Da        Isoelectric Point: 9.5362

>NTDB_id=117751 BE24_RS02390 WP_029379122.1 500914..501477(+) (comK/comK1) [Staphylococcus xylosus strain HKUOPL8]
MIQPYIIKKGDMVLQPCNLATGHYEGSYLLRYKADSQIIKERVSKIIDRSCRFYGSSYVFKKEDTMRITGISSKPPILFT
PLFPTYFFPTHSDRKADNTWINIHYVHNIRPLKEKKCKVTFVDNQSIVANISAHSMHHQYLNGIYYYYMMDRAARVATFD
PDSPIDYTKPQLNIYEALAKYSLFESK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=117751 BE24_RS02390 WP_029379122.1 500914..501477(+) (comK/comK1) [Staphylococcus xylosus strain HKUOPL8]
ATGATTCAACCATATATTATTAAAAAAGGTGATATGGTTTTACAACCATGCAATTTAGCTACTGGACATTATGAAGGTAG
TTACTTGCTAAGGTATAAAGCCGACAGTCAAATTATTAAAGAACGAGTATCAAAAATAATCGACCGTTCATGTAGGTTTT
ATGGTAGCAGTTATGTATTTAAAAAAGAAGATACCATGCGTATTACAGGTATAAGCAGTAAGCCACCCATTCTATTCACT
CCATTATTTCCCACTTATTTCTTTCCCACACACTCTGATCGTAAAGCAGATAATACCTGGATTAATATCCATTATGTACA
TAATATTAGACCACTTAAAGAAAAGAAATGTAAGGTTACTTTTGTAGATAATCAAAGTATTGTAGCTAACATTTCTGCTC
ATAGCATGCATCATCAATATTTAAATGGTATATATTATTATTACATGATGGATAGGGCAGCAAGAGTCGCTACATTTGAT
CCTGATTCGCCAATTGATTATACTAAACCACAATTAAATATATATGAAGCGTTGGCTAAATATTCGTTGTTTGAATCGAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

55.191

97.861

0.54
  comK/comK1 Staphylococcus aureus N315

55.191

97.861

0.54

Multiple sequence alignment