Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RG58_RS14410 Genome accession   NZ_CP010196
Coordinates   2756975..2757490 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain M9     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2751975..2762490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG58_RS14385 (RG58_13655) ygaZ 2752374..2753111 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  RG58_RS14390 (RG58_13660) ygaH 2753101..2753436 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  RG58_RS14395 (RG58_13665) emrR 2753527..2754057 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  RG58_RS14400 (RG58_13670) emrA 2754184..2755356 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  RG58_RS14405 (RG58_13675) emrB 2755373..2756911 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  RG58_RS14410 (RG58_13680) luxS 2756975..2757490 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  RG58_RS14415 (RG58_13685) gshA 2757640..2759196 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  RG58_RS14420 (RG58_13690) yqaA 2759269..2759697 (-) 429 WP_001287454.1 YqaA family protein -
  RG58_RS14425 (RG58_13695) yqaB 2759694..2760260 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  RG58_RS14455 (RG58_13725) csrA 2761853..2762038 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=117716 RG58_RS14410 WP_001130207.1 2756975..2757490(-) (luxS) [Escherichia coli strain M9]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=117716 RG58_RS14410 WP_001130207.1 2756975..2757490(-) (luxS) [Escherichia coli strain M9]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment