Detailed information NTG0117620

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: RG57_RS06575
• Genome accession: NZ_CP010191
• Coordinates: 1286409..1287434 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain M8
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1281409..1292434

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RG57_RS06555 (RG57_06220)	metJ	1282470..1282787 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
RG57_RS06560 (RG57_06225)	yiiX	1282971..1283579 (+)	609	WP_000797344.1	YiiX family permuted papain-like enzyme	-
RG57_RS06565 (RG57_06230)	rpmE	1283640..1283852 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
RG57_RS06570 (RG57_06235)	priA	1284055..1286253 (+)	2199	WP_001395720.1	primosomal protein N'	Machinery gene
RG57_RS06575 (RG57_06240)	cytR	1286409..1287434 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
RG57_RS06580 (RG57_06245)	ftsN	1287526..1288485 (+)	960	WP_000068834.1	cell division protein FtsN	-
RG57_RS06585 (RG57_06250)	hslV	1288578..1289108 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
RG57_RS06590 (RG57_06255)	hslU	1289118..1290449 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
RG57_RS06595 (RG57_06260)	menA	1290516..1291442 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
RG57_RS06600 (RG57_06265)	rraA	1291535..1292020 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
RG57_RS06605 (RG57_06270)	zapB	1292105..1292350 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=117620 RG57_RS06575 WP_000644904.1 1286409..1287434(+) (cytR) [Escherichia coli strain M8]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=117620 RG57_RS06575 WP_000644904.1 1286409..1287434(+) (cytR) [Escherichia coli strain M8]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTATCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628