Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RG56_RS14420 Genome accession   NZ_CP010186
Coordinates   2757438..2757953 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain M6     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2752438..2762953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG56_RS14395 (RG56_13665) ygaZ 2752837..2753574 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  RG56_RS14400 (RG56_13670) ygaH 2753564..2753899 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  RG56_RS14405 (RG56_13675) emrR 2753990..2754520 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  RG56_RS14410 (RG56_13680) emrA 2754647..2755819 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  RG56_RS14415 (RG56_13685) emrB 2755836..2757374 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  RG56_RS14420 (RG56_13690) luxS 2757438..2757953 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  RG56_RS14425 (RG56_13695) gshA 2758103..2759659 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  RG56_RS14430 (RG56_13700) yqaA 2759732..2760160 (-) 429 WP_001287454.1 YqaA family protein -
  RG56_RS14435 (RG56_13705) yqaB 2760157..2760723 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  RG56_RS14465 (RG56_13735) csrA 2762316..2762501 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=117553 RG56_RS14420 WP_001130207.1 2757438..2757953(-) (luxS) [Escherichia coli strain M6]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=117553 RG56_RS14420 WP_001130207.1 2757438..2757953(-) (luxS) [Escherichia coli strain M6]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment