Detailed information NTG0117409

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: RG54_RS15915
• Genome accession: NZ_CP010180
• Coordinates: 3021836..3022861 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain M1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3016836..3027861

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RG54_RS15885 (RG54_14980)	zapB	3016920..3017165 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
RG54_RS15890 (RG54_14985)	rraA	3017250..3017735 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
RG54_RS15895 (RG54_14990)	menA	3017828..3018754 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
RG54_RS15900 (RG54_14995)	hslU	3018821..3020152 (-)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
RG54_RS15905 (RG54_15000)	hslV	3020162..3020692 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
RG54_RS15910 (RG54_15005)	ftsN	3020785..3021744 (-)	960	WP_000068834.1	cell division protein FtsN	-
RG54_RS15915 (RG54_15010)	cytR	3021836..3022861 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
RG54_RS15920 (RG54_15015)	priA	3023017..3025215 (-)	2199	WP_001395720.1	primosomal protein N'	Machinery gene
RG54_RS15925 (RG54_15020)	rpmE	3025418..3025630 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
RG54_RS15930 (RG54_15025)	yiiX	3025691..3026299 (-)	609	WP_000797344.1	YiiX family permuted papain-like enzyme	-
RG54_RS15935 (RG54_15030)	metJ	3026483..3026800 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=117409 RG54_RS15915 WP_000644904.1 3021836..3022861(-) (cytR) [Escherichia coli strain M1]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=117409 RG54_RS15915 WP_000644904.1 3021836..3022861(-) (cytR) [Escherichia coli strain M1]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTATCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628