Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   BD33_RS07275 Genome accession   NZ_CP007193
Coordinates   1410823..1412241 (-) Length   472 a.a.
NCBI ID   WP_002851309.1    Uniprot ID   A0A1D9BM14
Organism   Campylobacter jejuni strain NS4-9-1     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1405823..1417241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BD33_RS07250 (BD33_07300) - 1406147..1406911 (+) 765 WP_002855821.1 TSUP family transporter -
  BD33_RS07255 (BD33_07305) ctsF 1406904..1408085 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  BD33_RS07260 (BD33_07310) ctsE 1408082..1409641 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  BD33_RS07265 (BD33_07315) ctsX 1409631..1410218 (-) 588 WP_002851370.1 membrane protein Machinery gene
  BD33_RS07270 (BD33_07320) ctsP 1410222..1410830 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  BD33_RS07275 (BD33_07325) ctsD 1410823..1412241 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  BD33_RS07280 (BD33_07330) ctsR 1412213..1412530 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  BD33_RS07285 (BD33_07335) nifJ 1412554..1416114 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  BD33_RS07290 (BD33_07340) - 1416207..1416848 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53281.89 Da        Isoelectric Point: 6.6184

>NTDB_id=117381 BD33_RS07275 WP_002851309.1 1410823..1412241(-) (ctsD) [Campylobacter jejuni strain NS4-9-1]
MIRLILILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEI
FNFFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQN
IEKEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQN
FNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKES
SKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=117381 BD33_RS07275 WP_002851309.1 1410823..1412241(-) (ctsD) [Campylobacter jejuni strain NS4-9-1]
ATGATAAGATTAATATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTT
TGATATCAGTATTAACGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTCAGTATTATTG
TTAAAGATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTGGACGAAATT
TTTAATTTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAA
GATTTTTAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGC
AAAGTGAATATAGCGGTAGTTTTGATGATGCAGAAGACAACATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAAT
ATAGAAAAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGC
AGGTCTTATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTA
AAAAACAAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAAT
TTTAATATAGGTTTAAATTCACAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAA
TTTGGGTTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTA
ATCCAAAGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGT
TCTAAAGGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATAT
CTTGCCTGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATA
ATAAACGACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAAT
AATCAAACTTTAATTTTAGGCGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAAT
TCCAATCCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATCGTTTTTATTATCACTCCAAGTA
TAGTAGATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(283-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D9BM14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.153

100

0.992

Multiple sequence alignment