Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RG54_RS08525 Genome accession   NZ_CP010180
Coordinates   1615367..1615882 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain M1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1610367..1620882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG54_RS08500 (RG54_08005) ygaZ 1610766..1611503 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  RG54_RS08505 (RG54_08010) ygaH 1611493..1611828 (+) 336 WP_000119764.1 L-valine transporter subunit YgaH -
  RG54_RS08510 (RG54_08015) emrR 1611919..1612449 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  RG54_RS08515 (RG54_08020) emrA 1612576..1613748 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  RG54_RS08520 (RG54_08025) emrB 1613765..1615303 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  RG54_RS08525 (RG54_08030) luxS 1615367..1615882 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  RG54_RS08530 (RG54_08035) gshA 1616032..1617588 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  RG54_RS08535 (RG54_08040) yqaA 1617661..1618089 (-) 429 WP_001287457.1 YqaA family protein -
  RG54_RS08540 (RG54_08045) yqaB 1618086..1618652 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  RG54_RS08570 (RG54_08075) csrA 1620111..1620296 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=117374 RG54_RS08525 WP_001130211.1 1615367..1615882(-) (luxS) [Escherichia coli strain M1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=117374 RG54_RS08525 WP_001130211.1 1615367..1615882(-) (luxS) [Escherichia coli strain M1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment