Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   BD28_RS07100 Genome accession   NZ_CP007189
Coordinates   1396401..1396712 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain HF5-5-1     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1391401..1401712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BD28_RS07080 (BD28_07065) ctsE 1392270..1393829 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  BD28_RS07085 (BD28_07070) ctsX 1393819..1394406 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  BD28_RS07090 (BD28_07075) ctsP 1394410..1395018 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  BD28_RS07095 (BD28_07080) ctsD 1395011..1396423 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  BD28_RS07100 (BD28_07085) ctsR 1396401..1396712 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  BD28_RS07105 (BD28_07090) nifJ 1396736..1400296 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  BD28_RS07110 (BD28_07095) - 1400389..1401030 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=117275 BD28_RS07100 WP_002862131.1 1396401..1396712(-) (ctsR) [Campylobacter jejuni strain HF5-5-1]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=117275 BD28_RS07100 WP_002862131.1 1396401..1396712(-) (ctsR) [Campylobacter jejuni strain HF5-5-1]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment