Detailed information NTG0117262

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: BD28_RS05560
• Genome accession: NZ_CP007189
• Coordinates: 1083320..1084270 (+)
• Length: 316 a.a.
• NCBI ID: WP_002899461.1
• Uniprot ID: A0A5Z1S6J2
• Organism: Campylobacter jejuni strain HF5-5-1
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1078320..1089270

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BD28_RS05545 (BD28_05535)	-	1079168..1081099 (-)	1932	WP_052785346.1	hypothetical protein	-
BD28_RS05550 (BD28_05540)	-	1081175..1082449 (+)	1275	WP_052785345.1	DUF2972 domain-containing protein	-
BD28_RS05555 (BD28_05545)	-	1082413..1083261 (-)	849	WP_002899460.1	glycosyltransferase family 2 protein	-
BD28_RS05560 (BD28_05550)	waaF	1083320..1084270 (+)	951	WP_002899461.1	lipopolysaccharide heptosyltransferase II	Regulator
BD28_RS05565 (BD28_05555)	-	1084256..1085020 (-)	765	WP_002899462.1	glycosyltransferase family 25 protein	-
BD28_RS05570 (BD28_05560)	gmhA	1085020..1085580 (-)	561	WP_002875424.1	D-sedoheptulose 7-phosphate isomerase	-
BD28_RS05575 (BD28_05565)	rfaE1	1085577..1086962 (-)	1386	WP_052785344.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
BD28_RS05580 (BD28_05570)	rfaD	1086955..1087908 (-)	954	WP_038813706.1	ADP-glyceromanno-heptose 6-epimerase	-
BD28_RS05585 (BD28_05575)	gmhB	1087909..1088470 (-)	562	Protein_1069	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
BD28_RS05590 (BD28_05580)	-	1088551..1088853 (+)	303	WP_002852762.1	cytochrome c	-
BD28_RS05595 (BD28_05585)	ccoS	1088876..1089082 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 316 a.a.
• Molecular weight: 36265.84 Da
• Isoelectric Point: 10.2322

>NTDB_id=117262 BD28_RS05560 WP_002899461.1 1083320..1084270(+) (waaF) [Campylobacter jejuni strain HF5-5-1]
MKIFIHLPTWLGDAVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLGIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI

Nucleotide

• Length: 951 bp

>NTDB_id=117262 BD28_RS05560 WP_002899461.1 1083320..1084270(+) (waaF) [Campylobacter jejuni strain HF5-5-1]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCACGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGTTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGGCATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGATAGT
GGCCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGTCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAACGAAAATGCAAAATTAGTACATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAGTGATTTTAAAGGCAATTCAAAATTTAATTAATATCTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

3D structure

• AlphaFold DB: A0A5Z1S6J2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	95.541	99.367	0.949