Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | AD53_RS05865 | Genome accession | NZ_CP007188 |
| Coordinates | 1088638..1088940 (+) | Length | 100 a.a. |
| NCBI ID | WP_002853046.1 | Uniprot ID | Q0P9H7 |
| Organism | Campylobacter jejuni strain HF5-4A-4 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1083439..1128835 | 1088638..1088940 | within | 0 |
Gene organization within MGE regions
Location: 1083439..1128835
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AD53_RS05835 (AD53_05865) | ssb | 1083439..1083990 (+) | 552 | WP_002853013.1 | single-stranded DNA-binding protein | - |
| AD53_RS05840 (AD53_05870) | rpsR | 1084001..1084261 (+) | 261 | WP_002853032.1 | 30S ribosomal protein S18 | - |
| AD53_RS05845 (AD53_05875) | lon | 1084321..1086696 (-) | 2376 | WP_002885146.1 | endopeptidase La | - |
| AD53_RS05850 (AD53_05880) | - | 1086713..1087360 (-) | 648 | WP_002852961.1 | outer membrane protein assembly factor BamD | - |
| AD53_RS05855 (AD53_05885) | fliW | 1087521..1087910 (+) | 390 | WP_002852982.1 | flagellar assembly protein FliW | - |
| AD53_RS05860 (AD53_05890) | proC | 1087910..1088641 (+) | 732 | WP_002858388.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| AD53_RS05865 (AD53_05895) | ctsT | 1088638..1088940 (+) | 303 | WP_002853046.1 | type II secretion system protein | Machinery gene |
| AD53_RS05870 (AD53_05900) | - | 1088937..1089119 (+) | 183 | Protein_1137 | hypothetical protein | - |
| AD53_RS05875 (AD53_05905) | - | 1089215..1089913 (-) | 699 | WP_041016326.1 | hypothetical protein | - |
| AD53_RS05880 (AD53_05910) | - | 1089913..1090587 (-) | 675 | WP_032584112.1 | LexA family transcriptional regulator | - |
| AD53_RS05885 (AD53_05915) | - | 1090737..1090937 (+) | 201 | WP_002804142.1 | hypothetical protein | - |
| AD53_RS05890 (AD53_05920) | - | 1090934..1093010 (+) | 2077 | Protein_1141 | DDE-type integrase/transposase/recombinase | - |
| AD53_RS05895 (AD53_05925) | - | 1093081..1094004 (+) | 924 | WP_002806833.1 | AAA family ATPase | - |
| AD53_RS05900 (AD53_05930) | - | 1094007..1094198 (+) | 192 | WP_002795448.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| AD53_RS05905 (AD53_05935) | - | 1094195..1094380 (+) | 186 | WP_002824157.1 | hypothetical protein | - |
| AD53_RS05910 (AD53_05940) | - | 1094514..1094855 (+) | 342 | WP_002791419.1 | DUF4406 domain-containing protein | - |
| AD53_RS05915 (AD53_05945) | - | 1094962..1095447 (+) | 486 | WP_075912952.1 | host-nuclease inhibitor Gam family protein | - |
| AD53_RS05920 (AD53_05950) | - | 1095506..1096468 (+) | 963 | WP_052834668.1 | hypothetical protein | - |
| AD53_RS05925 (AD53_05955) | - | 1096465..1096734 (+) | 270 | WP_002784531.1 | hypothetical protein | - |
| AD53_RS05930 (AD53_05960) | - | 1096734..1097426 (+) | 693 | WP_002793908.1 | hypothetical protein | - |
| AD53_RS05935 (AD53_05965) | - | 1097423..1097872 (+) | 450 | WP_002876315.1 | regulatory protein GemA | - |
| AD53_RS05940 (AD53_05970) | - | 1097919..1098194 (+) | 276 | WP_002784526.1 | hypothetical protein | - |
| AD53_RS05945 (AD53_05975) | - | 1098186..1098856 (-) | 671 | Protein_1152 | endonuclease | - |
| AD53_RS05950 (AD53_05980) | - | 1098950..1099234 (+) | 285 | WP_002784523.1 | Mor transcription activator family protein | - |
| AD53_RS05955 (AD53_05985) | - | 1099231..1100208 (-) | 978 | WP_002852060.1 | tail protein | - |
| AD53_RS05960 (AD53_05990) | - | 1100202..1100393 (-) | 192 | WP_002784520.1 | tail protein X | - |
| AD53_RS05965 (AD53_05995) | - | 1100386..1100760 (-) | 375 | WP_052834669.1 | phage tail protein | - |
| AD53_RS05970 (AD53_06000) | - | 1100892..1102130 (-) | 1239 | WP_052834670.1 | phage minor head protein | - |
| AD53_RS05975 (AD53_06005) | - | 1102133..1103503 (-) | 1371 | WP_002809611.1 | DUF935 family protein | - |
| AD53_RS05980 (AD53_06010) | terL | 1103513..1105183 (-) | 1671 | WP_002865471.1 | phage terminase large subunit | - |
| AD53_RS05985 (AD53_06015) | - | 1105183..1105782 (-) | 600 | WP_002803360.1 | DUF1804 family protein | - |
| AD53_RS05990 (AD53_06020) | - | 1105775..1106233 (-) | 459 | WP_002855185.1 | phage protein Gp36 family protein | - |
| AD53_RS05995 (AD53_06025) | - | 1106349..1107326 (-) | 978 | WP_032584092.1 | major capsid protein | - |
| AD53_RS06000 (AD53_06030) | - | 1107329..1107856 (-) | 528 | WP_032584089.1 | hypothetical protein | - |
| AD53_RS06005 (AD53_06035) | - | 1107859..1108674 (-) | 816 | WP_002901531.1 | phage protease | - |
| AD53_RS06010 (AD53_06040) | - | 1108676..1109110 (-) | 435 | WP_002784501.1 | hypothetical protein | - |
| AD53_RS06015 (AD53_06045) | - | 1109259..1109648 (+) | 390 | WP_075912925.1 | D-Ala-D-Ala carboxypeptidase family metallohydrolase | - |
| AD53_RS06020 (AD53_06050) | - | 1109659..1110000 (+) | 342 | WP_002827119.1 | hypothetical protein | - |
| AD53_RS06025 (AD53_06055) | - | 1109997..1110245 (+) | 249 | WP_002784496.1 | hypothetical protein | - |
| AD53_RS06030 (AD53_06065) | - | 1110357..1110671 (+) | 315 | WP_002784492.1 | phage holin family protein | - |
| AD53_RS06035 (AD53_06070) | - | 1110671..1111303 (+) | 633 | WP_002876443.1 | phage baseplate assembly protein V | - |
| AD53_RS06040 (AD53_06075) | - | 1111312..1111503 (+) | 192 | WP_002795238.1 | hypothetical protein | - |
| AD53_RS06045 (AD53_06080) | - | 1111500..1111790 (+) | 291 | WP_002795239.1 | GPW/gp25 family protein | - |
| AD53_RS06050 (AD53_06085) | - | 1111787..1112953 (+) | 1167 | WP_032584246.1 | baseplate J/gp47 family protein | - |
| AD53_RS06055 (AD53_06090) | - | 1112950..1113570 (+) | 621 | WP_043012798.1 | phage tail protein I | - |
| AD53_RS10355 (AD53_06095) | - | 1113570..1114535 (+) | 966 | WP_042963348.1 | phage tail protein | - |
| AD53_RS06065 (AD53_06100) | - | 1114560..1115066 (+) | 507 | WP_002924980.1 | DUF4376 domain-containing protein | - |
| AD53_RS06070 (AD53_06105) | - | 1115063..1115434 (+) | 372 | WP_042963349.1 | DUF1353 domain-containing protein | - |
| AD53_RS06075 (AD53_06110) | - | 1115558..1116565 (+) | 1008 | WP_002922154.1 | hypothetical protein | - |
| AD53_RS06080 (AD53_06115) | - | 1116584..1117774 (+) | 1191 | WP_075912953.1 | phage tail protein | - |
| AD53_RS06085 (AD53_06120) | - | 1117897..1118412 (+) | 516 | WP_002865794.1 | phage major tail tube protein | - |
| AD53_RS06090 (AD53_06125) | - | 1118423..1118659 (+) | 237 | WP_002789979.1 | phage tail assembly protein | - |
| AD53_RS10085 | - | 1118643..1118780 (+) | 138 | WP_172670202.1 | hypothetical protein | - |
| AD53_RS06095 (AD53_06130) | - | 1118767..1118997 (-) | 231 | WP_002870149.1 | hypothetical protein | - |
| AD53_RS06100 (AD53_06135) | - | 1119027..1120991 (+) | 1965 | WP_044261143.1 | phage tail tape measure protein | - |
| AD53_RS06105 (AD53_06140) | - | 1120993..1121367 (+) | 375 | WP_002789966.1 | phage tail protein | - |
| AD53_RS06110 (AD53_06145) | - | 1121360..1121551 (+) | 192 | WP_002789964.1 | tail protein X | - |
| AD53_RS06115 (AD53_06150) | - | 1121545..1122513 (+) | 969 | WP_002865687.1 | phage tail protein | - |
| AD53_RS06120 (AD53_06155) | - | 1122615..1123430 (+) | 816 | WP_075912954.1 | DNA adenine methylase | - |
| AD53_RS06125 (AD53_06160) | - | 1123460..1123747 (-) | 288 | WP_075912922.1 | hypothetical protein | - |
| AD53_RS06130 (AD53_06165) | - | 1123827..1124021 (-) | 195 | WP_002843339.1 | hypothetical protein | - |
| AD53_RS06135 (AD53_06170) | - | 1124031..1124351 (-) | 321 | WP_002865000.1 | hypothetical protein | - |
| AD53_RS06140 (AD53_06175) | - | 1124432..1125061 (-) | 630 | WP_032582421.1 | LexA family transcriptional regulator | - |
| AD53_RS06145 (AD53_06180) | - | 1125141..1126829 (-) | 1689 | WP_075912921.1 | P-loop NTPase fold protein | - |
| AD53_RS06155 (AD53_06185) | - | 1127272..1127760 (+) | 489 | Protein_1194 | hypothetical protein | - |
| AD53_RS06160 (AD53_06190) | - | 1127757..1128209 (+) | 453 | WP_002859148.1 | hypothetical protein | - |
| AD53_RS06165 (AD53_06195) | hemD | 1128206..1128835 (-) | 630 | WP_002858312.1 | uroporphyrinogen-III synthase | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 12162.27 Da Isoelectric Point: 6.2957
>NTDB_id=117233 AD53_RS05865 WP_002853046.1 1088638..1088940(+) (ctsT) [Campylobacter jejuni strain HF5-4A-4]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
Nucleotide
Download Length: 303 bp
>NTDB_id=117233 AD53_RS05865 WP_002853046.1 1088638..1088940(+) (ctsT) [Campylobacter jejuni strain HF5-4A-4]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGACGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGACGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
99 |
100 |
0.99 |