Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   YSQ_RS05815 Genome accession   NZ_CP007183
Coordinates   1141569..1142015 (-) Length   148 a.a.
NCBI ID   WP_002776437.1    Uniprot ID   A0A0Q2LSM9
Organism   Campylobacter coli RM1875     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1136569..1147015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSQ_RS05800 (YSQ_05945) - 1138375..1138983 (+) 609 WP_002781606.1 gamma-glutamyl-CDP-amidate hydrolase -
  YSQ_RS05805 (YSQ_05950) - 1138980..1139750 (+) 771 WP_002781608.1 sugar phosphate nucleotidyltransferase -
  YSQ_RS05810 (YSQ_05955) - 1139734..1141572 (-) 1839 WP_002839015.1 primosomal protein N' -
  YSQ_RS05815 (YSQ_05960) Cj0683 1141569..1142015 (-) 447 WP_002776437.1 type II secretion system protein Machinery gene
  YSQ_RS05820 (YSQ_05965) - 1142012..1142257 (-) 246 WP_002776428.1 hypothetical protein -
  YSQ_RS05825 (YSQ_05970) - 1142247..1142477 (-) 231 WP_002776426.1 hypothetical protein -
  YSQ_RS05830 (YSQ_05975) uvrB 1142631..1144604 (+) 1974 WP_002789903.1 excinuclease ABC subunit UvrB -
  YSQ_RS05835 (YSQ_05980) - 1144639..1146063 (-) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17302.19 Da        Isoelectric Point: 8.4538

>NTDB_id=117215 YSQ_RS05815 WP_002776437.1 1141569..1142015(-) (Cj0683) [Campylobacter coli RM1875]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQVELKQISSFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=117215 YSQ_RS05815 WP_002776437.1 1141569..1142015(-) (Cj0683) [Campylobacter coli RM1875]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAACACTCAAAAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTGCTTCATACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2LSM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.108

100

0.581

Multiple sequence alignment