Detailed information NTG0117211

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: YSQ_RS03185
• Genome accession: NZ_CP007183
• Coordinates: 640943..641896 (-)
• Length: 317 a.a.
• NCBI ID: WP_002839071.1
• Uniprot ID: A0A5Z1EHW0
• Organism: Campylobacter coli RM1875
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 635943..646896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
YSQ_RS03150 (YSQ_03190)	-	636126..636326 (+)	201	WP_002777240.1	cbb3-type cytochrome oxidase assembly protein	-
YSQ_RS03155 (YSQ_03195)	-	636356..636655 (-)	300	WP_002777238.1	c-type cytochrome	-
YSQ_RS03160 (YSQ_03200)	-	636732..637292 (+)	561	WP_002839075.1	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
YSQ_RS03165 (YSQ_03205)	rfaD	637293..638246 (+)	954	WP_002780616.1	ADP-glyceromanno-heptose 6-epimerase	-
YSQ_RS03170 (YSQ_03210)	rfaE1	638239..639624 (+)	1386	WP_002786305.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
YSQ_RS03175 (YSQ_03215)	gmhA	639621..640181 (+)	561	WP_002806601.1	D-sedoheptulose 7-phosphate isomerase	-
YSQ_RS03180 (YSQ_03220)	-	640181..640936 (+)	756	WP_002839073.1	glycosyltransferase family 25 protein	-
YSQ_RS03185 (YSQ_03225)	waaF	640943..641896 (-)	954	WP_002839071.1	glycosyltransferase family 9 protein	Regulator
YSQ_RS03190 (YSQ_03230)	-	641955..642791 (+)	837	WP_002839069.1	glycosyltransferase family 2 protein	-
YSQ_RS03195 (YSQ_03235)	rfbA	642801..643679 (+)	879	WP_002839068.1	glucose-1-phosphate thymidylyltransferase RfbA	-
YSQ_RS03200 (YSQ_03240)	rfbB	643683..644714 (+)	1032	WP_002839067.1	dTDP-glucose 4,6-dehydratase	-
YSQ_RS03205 (YSQ_03245)	-	644711..645112 (+)	402	WP_002839065.1	sugar 3,4-ketoisomerase	-
YSQ_RS03210 (YSQ_03250)	-	645102..645545 (+)	444	WP_002806621.1	acyltransferase	-
YSQ_RS03215 (YSQ_03255)	-	645546..646550 (+)	1005	WP_002799671.1	glycosyltransferase family 2 protein	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 36557.15 Da
• Isoelectric Point: 10.2875

>NTDB_id=117211 YSQ_RS03185 WP_002839071.1 640943..641896(-) (waaF) [Campylobacter coli RM1875]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDVSYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENARWVHLNLACMPCMQKTCPLKHHKCMKDLKPEIIIEVSKQLLFLN

Nucleotide

• Length: 954 bp

>NTDB_id=117211 YSQ_RS03185 WP_002839071.1 640943..641896(-) (waaF) [Campylobacter coli RM1875]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGCAAAATCGATTTTAGCTTTGCT
TTTAGGTCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGTGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAAGTAAAAACCGTGGCTATTTTTGGGCCTACCAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAGATGGGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCAGAAATCATCATAGAAGTAAGTAAACAATTGCTATTTCTAAATTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (96-294)

3D structure

• AlphaFold DB: A0A5Z1EHW0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	93.631	99.054	0.927