Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   YSS_RS07440 Genome accession   NZ_CP007181
Coordinates   1439705..1440886 (-) Length   393 a.a.
NCBI ID   WP_025399203.1    Uniprot ID   -
Organism   Campylobacter coli RM4661     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1434705..1445886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSS_RS07415 (YSS_07585) fliL 1435842..1436378 (+) 537 WP_002779164.1 flagellar basal body-associated protein FliL -
  YSS_RS07420 (YSS_07590) acpS 1436378..1436725 (+) 348 WP_002779165.1 holo-ACP synthase -
  YSS_RS07425 (YSS_07595) - 1436735..1437151 (-) 417 WP_025399200.1 hypothetical protein -
  YSS_RS07430 (YSS_07600) - 1437148..1438518 (-) 1371 WP_025399201.1 cytochrome P450 -
  YSS_RS07435 (YSS_07605) - 1438515..1439636 (-) 1122 WP_025399202.1 hypothetical protein -
  YSS_RS07440 (YSS_07610) kpsS 1439705..1440886 (-) 1182 WP_025399203.1 capsule biosynthesis protein Regulator
  YSS_RS07445 (YSS_07615) - 1440883..1442910 (-) 2028 WP_025399204.1 capsular polysaccharide biosynthesis protein -
  YSS_RS09880 (YSS_07620) - 1442942..1444595 (-) 1654 Protein_1459 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 46387.03 Da        Isoelectric Point: 9.9619

>NTDB_id=117189 YSS_RS07440 WP_025399203.1 1439705..1440886(-) (kpsS) [Campylobacter coli RM4661]
MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMEKNKTKVLKLNFNGGDFFFYPNGKRCKCDEKDLENFYESFFKEKKI
DAIVMYNDCRLIHAKAIKVAKGLGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
MAFSAFLYWLFSFLLAPFFNNKLHHRTLFPFEFLFWFRSLYRKYLYKLTEKKLNQKIYSLEKKYFLAILQVYNDTQIKHH
YRKSIEEFIEDLILSFANHARAKSYLVFKHHPMDRGYRNYSKLINELSQKYHVEGRIFYVHDTYLPTLLKNALGCITINS
TVGLSAILEGCPTKVCGNAFYNFEGLAYPKKLQFFWREAHAYKPNPNLVLNFKNYLLNTNQFNGNFYKNSFLG

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=117189 YSS_RS07440 WP_025399203.1 1439705..1440886(-) (kpsS) [Campylobacter coli RM4661]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGTCCTGTAGGGACTTTTTT
TCACCGCCTTGCCATAAAGATGGAAAAAAATAAAACCAAAGTTTTAAAGCTTAATTTTAACGGAGGGGATTTTTTTTTCT
ATCCAAACGGAAAAAGGTGCAAGTGCGATGAAAAGGATCTTGAAAATTTTTATGAGAGCTTTTTTAAAGAAAAAAAGATA
GATGCTATTGTGATGTATAATGATTGCCGTTTGATCCATGCAAAAGCTATCAAAGTAGCTAAGGGGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATCCTTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGTTTTAAATTT
ATGGCTTTTAGTGCTTTTTTGTATTGGCTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CTTATTTCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATATCTTTATAAACTCACAGAAAAAAAACTTA
ATCAAAAAATTTATAGCCTTGAAAAAAAGTACTTTTTGGCTATTTTGCAAGTTTATAATGATACGCAAATTAAGCACCAT
TATAGAAAAAGCATAGAAGAATTTATAGAAGATCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTGT
CTTTAAACATCATCCTATGGATAGGGGATATAGAAATTATTCTAAACTTATAAATGAGCTAAGTCAAAAATACCATGTAG
AAGGAAGAATTTTCTATGTACATGATACTTATTTGCCTACTCTTTTAAAAAATGCTTTAGGTTGTATTACGATCAATTCT
ACAGTAGGTTTAAGTGCTATTTTAGAGGGTTGTCCTACTAAGGTTTGTGGAAATGCATTTTACAATTTTGAAGGCCTAGC
TTATCCTAAAAAACTTCAATTTTTTTGGCGCGAAGCTCATGCTTATAAACCCAATCCTAATTTGGTTTTAAATTTCAAAA
ACTATCTTTTAAATACAAATCAATTCAACGGCAATTTTTACAAAAATTCGTTTTTAGGTTGA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

86.99

99.746

0.868

Multiple sequence alignment