Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   YSS_RS07155 Genome accession   NZ_CP007181
Coordinates   1375966..1376934 (+) Length   322 a.a.
NCBI ID   WP_025399178.1    Uniprot ID   A0A644SB87
Organism   Campylobacter coli RM4661     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1370966..1381934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSS_RS07130 (YSS_07300) - 1371822..1372547 (-) 726 WP_025399176.1 phosphatidate cytidylyltransferase -
  YSS_RS07135 (YSS_07305) - 1372556..1372893 (-) 338 Protein_1397 hypothetical protein -
  YSS_RS07140 (YSS_07310) - 1372896..1374203 (-) 1308 WP_025399177.1 NFACT family protein -
  YSS_RS07145 (YSS_07315) - 1374266..1374841 (+) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  YSS_RS07150 (YSS_07320) - 1374838..1375833 (+) 996 WP_002803640.1 phospholipase A -
  YSS_RS07155 (YSS_07325) ceuB 1375966..1376934 (+) 969 WP_025399178.1 ABC transporter permease Machinery gene
  YSS_RS07160 (YSS_07330) - 1376927..1377865 (+) 939 WP_002777770.1 iron chelate uptake ABC transporter family permease subunit -
  YSS_RS07165 (YSS_07335) - 1377862..1378617 (+) 756 WP_025399179.1 ATP-binding cassette domain-containing protein -
  YSS_RS07170 (YSS_07340) - 1378632..1379622 (+) 991 Protein_1404 siderophore ABC transporter substrate-binding protein -
  YSS_RS07175 (YSS_07345) - 1379788..1380420 (+) 633 WP_025399180.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35479.34 Da        Isoelectric Point: 9.5069

>NTDB_id=117187 YSS_RS07155 WP_025399178.1 1375966..1376934(+) (ceuB) [Campylobacter coli RM4661]
MLFKHLFSLNILLILLVVFGMISLFIGVIRINLDDIFSLSATQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQALIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSVGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=117187 YSS_RS07155 WP_025399178.1 1375966..1376934(+) (ceuB) [Campylobacter coli RM4661]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATGATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCGCTACCCAGCTTGAAATCATTTTGCTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCCCCAACTACCGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTGCAGGAGCTTC
TTTTTTTACTCAAGCTCTCATCGCATCTATTTTTGCTCTTTTAGGTTCTTTTATATTTATTCAGATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGCTTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCGTTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGGCTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTGATCTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A644SB87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

90.062

100

0.901

Multiple sequence alignment