Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | YSS_RS06025 | Genome accession | NZ_CP007181 |
| Coordinates | 1156925..1157875 (+) | Length | 316 a.a. |
| NCBI ID | WP_002825333.1 | Uniprot ID | A0A2A4L5T6 |
| Organism | Campylobacter coli RM4661 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1138368..1168004 | 1156925..1157875 | within | 0 |
Gene organization within MGE regions
Location: 1138368..1168004
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YSS_RS05935 (YSS_06105) | - | 1138368..1139297 (-) | 930 | WP_025399069.1 | glycosyltransferase family 2 protein | - |
| YSS_RS05940 (YSS_06110) | pglH | 1139290..1140369 (-) | 1080 | WP_134792332.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| YSS_RS05945 (YSS_06115) | pglK | 1140366..1142060 (-) | 1695 | WP_025399071.1 | ABC-type lipopolysaccharide transporter PglK | - |
| YSS_RS05950 (YSS_06120) | galE | 1142054..1143040 (-) | 987 | WP_025399072.1 | UDP-glucose 4-epimerase GalE | - |
| YSS_RS05955 (YSS_06125) | - | 1143098..1143889 (-) | 792 | WP_025399073.1 | 3'-5' exonuclease | - |
| YSS_RS05960 (YSS_06130) | waaC | 1143954..1144982 (+) | 1029 | WP_025399074.1 | lipopolysaccharide heptosyltransferase I | - |
| YSS_RS05965 (YSS_06135) | htrB | 1144972..1145859 (+) | 888 | WP_025399075.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| YSS_RS05970 (YSS_06140) | - | 1145856..1147406 (+) | 1551 | WP_025399076.1 | glycosyltransferase | - |
| YSS_RS05975 (YSS_06145) | - | 1147375..1148262 (-) | 888 | WP_025399077.1 | glycosyltransferase family 2 protein | - |
| YSS_RS05980 (YSS_06150) | - | 1148255..1149463 (-) | 1209 | WP_025399078.1 | glycosyltransferase family 2 protein | - |
| YSS_RS05985 (YSS_06155) | - | 1149541..1150512 (-) | 972 | WP_025399079.1 | glycosyltransferase family 2 protein | - |
| YSS_RS05990 (YSS_06160) | - | 1150601..1151479 (+) | 879 | WP_025399080.1 | alpha-2,3-sialyltransferase | - |
| YSS_RS05995 (YSS_06165) | neuB | 1151480..1152520 (+) | 1041 | WP_025399081.1 | N-acetylneuraminate synthase | - |
| YSS_RS06000 (YSS_06170) | neuC | 1152517..1153641 (+) | 1125 | WP_025399082.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| YSS_RS10655 | - | 1153634..1154176 (+) | 543 | Protein_1179 | beta-1,4-N-acetylgalactosaminyltransferase | - |
| YSS_RS10660 | - | 1154248..1154580 (+) | 333 | WP_019260376.1 | hypothetical protein | - |
| YSS_RS06010 (YSS_06180) | - | 1154577..1155242 (+) | 666 | WP_002869017.1 | acylneuraminate cytidylyltransferase family protein | - |
| YSS_RS06015 (YSS_06185) | - | 1155230..1156114 (+) | 885 | WP_025399083.1 | CatB-related O-acetyltransferase | - |
| YSS_RS06020 (YSS_06190) | - | 1156054..1156866 (-) | 813 | WP_025399084.1 | glycosyltransferase family 2 protein | - |
| YSS_RS06025 (YSS_06195) | waaF | 1156925..1157875 (+) | 951 | WP_002825333.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| YSS_RS06030 (YSS_06200) | - | 1157861..1158625 (-) | 765 | WP_002825331.1 | glycosyltransferase family 25 protein | - |
| YSS_RS06035 (YSS_06205) | gmhA | 1158625..1159185 (-) | 561 | WP_002868599.1 | D-sedoheptulose 7-phosphate isomerase | - |
| YSS_RS06040 (YSS_06210) | rfaE1 | 1159182..1160567 (-) | 1386 | WP_025399085.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| YSS_RS06045 (YSS_06215) | rfaD | 1160560..1161513 (-) | 954 | WP_002853798.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| YSS_RS06050 (YSS_06220) | gmhB | 1161514..1162031 (-) | 518 | Protein_1189 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| YSS_RS06055 (YSS_06225) | - | 1162150..1162449 (+) | 300 | WP_002777238.1 | cytochrome c | - |
| YSS_RS06060 (YSS_06230) | - | 1162479..1162679 (-) | 201 | WP_002777240.1 | cbb3-type cytochrome oxidase assembly protein | - |
| YSS_RS06065 (YSS_06235) | - | 1162672..1165035 (-) | 2364 | WP_134792333.1 | heavy metal translocating P-type ATPase | - |
| YSS_RS06070 (YSS_06240) | rho | 1165114..1166445 (+) | 1332 | WP_025399087.1 | transcription termination factor Rho | - |
| YSS_RS06075 (YSS_06245) | - | 1166448..1168004 (+) | 1557 | WP_002787752.1 | DNA polymerase III subunit gamma/tau | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36243.74 Da Isoelectric Point: 10.2421
>NTDB_id=117181 YSS_RS06025 WP_002825333.1 1156925..1157875(+) (waaF) [Campylobacter coli RM4661]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFSNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGTGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKIKTVAIFGPTKFTQTSPWQNENATLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVIVKAIQNLINI
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFSNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGTGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKIKTVAIFGPTKFTQTSPWQNENATLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVIVKAIQNLINI
Nucleotide
Download Length: 951 bp
>NTDB_id=117181 YSS_RS06025 WP_002825333.1 1156925..1157875(+) (waaF) [Campylobacter coli RM4661]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTTCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGCAAAATCGATTTTAGCTTTGCT
TTTAGGTCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCACAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGTGATCTTTTCATCACAAATGACAGT
GGCCCTATGCACATAAGTGCGGTCTATAAGATAAAAACCGTGGCTATTTTTGGTCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAACGAAAATGCAACATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAGTGATTGTAAAAGCGATTCAAAATTTAATTAATATCTAA
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCGCCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTTCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGCAAAATCGATTTTAGCTTTGCT
TTTAGGTCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCACAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGTGATCTTTTCATCACAAATGACAGT
GGCCCTATGCACATAAGTGCGGTCTATAAGATAAAAACCGTGGCTATTTTTGGTCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAACGAAAATGCAACATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAGTGATTGTAAAAGCGATTCAAAATTTAATTAATATCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
92.675 |
99.367 |
0.921 |