Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   YSS_RS03045 Genome accession   NZ_CP007181
Coordinates   601447..601893 (+) Length   148 a.a.
NCBI ID   WP_002825371.1    Uniprot ID   A0A2A4L594
Organism   Campylobacter coli RM4661     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 596447..606893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSS_RS03025 (YSS_03060) - 597398..598823 (+) 1426 Protein_585 anaerobic C4-dicarboxylate transporter -
  YSS_RS03030 (YSS_03065) uvrB 598858..600831 (-) 1974 WP_025398823.1 excinuclease ABC subunit UvrB -
  YSS_RS03035 (YSS_03070) - 600985..601215 (+) 231 WP_002776426.1 hypothetical protein -
  YSS_RS03040 (YSS_03075) - 601205..601450 (+) 246 WP_002776428.1 hypothetical protein -
  YSS_RS03045 (YSS_03080) Cj0683 601447..601893 (+) 447 WP_002825371.1 type II secretion system protein Machinery gene
  YSS_RS03050 (YSS_03085) - 601890..603728 (+) 1839 WP_025398824.1 primosomal protein N' -
  YSS_RS03055 (YSS_03090) - 603721..604479 (-) 759 WP_025398825.1 CTP:phosphoglutamine cytidylyltransferase -
  YSS_RS03060 (YSS_03095) - 604481..605083 (-) 603 WP_002885258.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17303.13 Da        Isoelectric Point: 8.4538

>NTDB_id=117177 YSS_RS03045 WP_002825371.1 601447..601893(+) (Cj0683) [Campylobacter coli RM4661]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQVELKQISSFSPNLDEAKNNTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=117177 YSS_RS03045 WP_002825371.1 601447..601893(+) (Cj0683) [Campylobacter coli RM4661]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAAACAATACTCAAAAAGAA
AAGCTATTTTACTGCCAAACTAGCCAAAACTGTACTTATTCTTTACTTCACACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A4L594

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.784

100

0.588

Multiple sequence alignment